Variant report

Variant	rs539778059
Chromosome Location	chr11:35387776-35387777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35313589..35315807-chr11:35386696..35389378,2	MCF-7	breast:
2	chr11:35347909..35350349-chr11:35386183..35388809,2	MCF-7	breast:
3	chr11:35382673..35391138-chr11:35406916..35414742,25	MCF-7	breast:
4	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
5	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
6	chr11:35386181..35389087-chr11:35424824..35428139,4	MCF-7	breast:
7	chr11:35387393..35390278-chr11:35400406..35402784,2	K562	blood:
8	chr11:35386975..35387964-chr11:35411130..35412056,2	MCF-7	breast:
9	chr11:35386128..35387848-chr11:35389214..35391974,2	K562	blood:
10	chr11:35387183..35388149-chr11:35412087..35413038,3	MCF-7	breast:
11	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
12	chr11:35297652..35298177-chr11:35387119..35387876,2	MCF-7	breast:
13	chr11:35195238..35197148-chr11:35385944..35388591,2	MCF-7	breast:
14	chr11:35385110..35389283-chr11:35389686..35393364,5	MCF-7	breast:
15	chr11:35385915..35388299-chr11:35402926..35406679,3	MCF-7	breast:
16	chr11:35387570..35390086-chr11:35424271..35427012,2	MCF-7	breast:
17	chr11:35301697..35307899-chr11:35384037..35387970,7	MCF-7	breast:
18	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
19	chr11:35291340..35293011-chr11:35387176..35389030,2	MCF-7	breast:
20	chr11:35315251..35317672-chr11:35387334..35389699,2	MCF-7	breast:
21	chr11:35367320..35368822-chr11:35387386..35389201,2	MCF-7	breast:
22	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
23	chr11:35387503..35389953-chr11:35393372..35395459,2	MCF-7	breast:
24	chr11:35285135..35288083-chr11:35386749..35388761,2	MCF-7	breast:
25	chr11:35359115..35360850-chr11:35385171..35387976,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction
ENSG00000255004	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3359146	chr11:35386910-35388389	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35383800-35388200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:35384800-35389800	Enhancers	Osteobl	bone
3	chr11:35385400-35388000	Enhancers	Brain Anterior Caudate	brain
4	chr11:35385600-35388200	Enhancers	Lung	lung
5	chr11:35385600-35388200	Weak transcription	Right Ventricle	heart
6	chr11:35385600-35388800	Weak transcription	Aorta	Aorta
7	chr11:35385800-35388200	Weak transcription	Right Atrium	heart
8	chr11:35385800-35388400	Enhancers	Stomach Smooth Muscle	stomach
9	chr11:35385800-35390200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:35385800-35394600	Weak transcription	Left Ventricle	heart
11	chr11:35385800-35394600	Weak transcription	Psoas Muscle	Psoas
12	chr11:35386000-35388800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:35386000-35390200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:35386200-35388600	Weak transcription	Fetal Heart	heart
15	chr11:35386200-35390800	Weak transcription	Fetal Brain Male	brain
16	chr11:35386400-35388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:35386400-35388600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:35386400-35398600	Weak transcription	Fetal Brain Female	brain
19	chr11:35386600-35388000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:35386600-35388400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:35386600-35388800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:35386600-35389000	Weak transcription	NH-A	brain
23	chr11:35386800-35387800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:35386800-35388600	Weak transcription	HSMMtube	muscle
25	chr11:35386800-35388600	Weak transcription	NHLF	lung
26	chr11:35386800-35388800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:35387000-35387800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:35387000-35388600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:35387000-35388600	Weak transcription	NHDF-Ad	bronchial
30	chr11:35387000-35389800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:35387000-35390200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:35387000-35390200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:35387200-35387800	Enhancers	Brain Hippocampus Middle	brain
34	chr11:35387400-35388200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:35387400-35389000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:35387600-35388200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:35387600-35388200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:35387600-35388400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:35387600-35392800	Weak transcription	Pancreas	Pancrea

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