Variant report

Variant	rs539950830
Chromosome Location	chr7:127032431-127032432
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCLAF1	chr7:127032079-127033345	GM12878	blood:	n/a	chr7:127032429-127032442 chr7:127032987-127033000 chr7:127032340-127032349 chr7:127032970-127032979 chr7:127033122-127033131 chr7:127032788-127032797
2	CHD1	chr7:127031088-127033775	IMR90	lung:	n/a	chr7:127032379-127032389
3	POLR2A	chr7:127031733-127033229	A549	lung:	n/a	n/a
4	YY1	chr7:127032185-127032446	HCT-116	colon:	n/a	chr7:127032428-127032442 chr7:127032208-127032222
5	POLR2A	chr7:127031702-127033360	PFSK-1	brain:	n/a	n/a
6	RXRA	chr7:127032234-127032441	GM12878	blood:	n/a	n/a
7	GABPA	chr7:127031609-127033083	HL-60	blood:	n/a	chr7:127032391-127032400
8	MYC	chr7:127031988-127032500	GM12878	blood:	n/a	chr7:127032026-127032035
9	POLR2A	chr7:127031450-127033847	GM12891	blood:	n/a	n/a
10	GABPA	chr7:127031641-127033220	A549	lung:	n/a	chr7:127032391-127032400
11	CHD2	chr7:127032094-127033324	GM12878	blood:	n/a	chr7:127032379-127032389
12	TAF1	chr7:127032180-127032503	GM12891	blood:	n/a	n/a
13	POU2F2	chr7:127031950-127032505	GM12878	blood:	n/a	chr7:127032436-127032448
14	ELF1	chr7:127031619-127033358	GM12878	blood:	n/a	chr7:127032988-127033000 chr7:127031964-127031976 chr7:127032292-127032301 chr7:127031982-127031994 chr7:127031972-127031984
15	POU2F2	chr7:127031734-127033166	GM12891	blood:	n/a	chr7:127032670-127032682 chr7:127032436-127032448
16	JUND	chr7:127032090-127033231	K562	blood:	n/a	n/a
17	BCL11A	chr7:127032127-127032451	GM12878	blood:	n/a	chr7:127032429-127032442 chr7:127032340-127032349
18	MAX	chr7:127031599-127033723	HepG2	liver:	n/a	chr7:127033389-127033398 chr7:127032026-127032035 chr7:127033387-127033400 chr7:127032671-127032681 chr7:127033388-127033399
19	EGR1	chr7:127031964-127033174	HCT-116	colon:	n/a	chr7:127032034-127032044 chr7:127032809-127032824 chr7:127032668-127032681 chr7:127032788-127032797 chr7:127032668-127032678 chr7:127032779-127032792 chr7:127033054-127033063
20	POLR2A	chr7:127032129-127033493	SK-N-SH	brain:	n/a	n/a
21	EGR1	chr7:127032017-127032495	GM12878	blood:	n/a	chr7:127032034-127032044
22	MYC	chr7:127031678-127032586	MCF-7	breast:	n/a	chr7:127032026-127032035
23	CHD2	chr7:127032099-127033169	HepG2	liver:	n/a	chr7:127032379-127032389
24	JUND	chr7:127031647-127033143	A549	lung:	n/a	n/a
25	SIN3AK20	chr7:127031476-127033533	MCF-7	breast:	n/a	n/a
26	CREB1	chr7:127031571-127033319	HepG2	liver:	n/a	n/a
27	POLR2A	chr7:127032060-127033340	PANC-1	pancreas:	n/a	n/a
28	TAF1	chr7:127032090-127032526	HepG2	liver:	n/a	n/a
29	ETS1	chr7:127031656-127033389	K562	blood:	n/a	chr7:127032788-127032802 chr7:127031776-127031789 chr7:127031862-127031879 chr7:127032389-127032400 chr7:127032787-127032800 chr7:127032617-127032630 chr7:127032785-127032800 chr7:127032789-127032800
30	RELA	chr7:127031667-127033403	GM18951	blood:	n/a	n/a
31	POLR2A	chr7:127031444-127033564	HL-60	blood:	n/a	n/a
32	FOXP2	chr7:127032058-127032545	PFSK-1	brain:	n/a	n/a
33	TAF1	chr7:127031710-127033304	GM12878	blood:	n/a	n/a
34	MAZ	chr7:127031443-127033854	IMR90	lung:	n/a	chr7:127033389-127033398 chr7:127032026-127032035 chr7:127033387-127033400 chr7:127032671-127032681 chr7:127033388-127033399
35	REST	chr7:127032215-127032928	MCF-7	breast:	n/a	n/a
36	YY1	chr7:127031744-127033144	K562	blood:	n/a	chr7:127033052-127033066 chr7:127032428-127032442 chr7:127032007-127032021 chr7:127032208-127032222
37	POLR2A	chr7:127031543-127033368	GM12891	blood:	n/a	n/a
38	TCF7L2	chr7:127032266-127032733	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr7:127032193-127033545	U87	brain:	n/a	n/a
40	ZMIZ1	chr7:127032052-127033426	K562	blood:	n/a	n/a
41	ATF2	chr7:127032180-127032447	GM12878	blood:	n/a	n/a
42	PAX5	chr7:127032085-127032458	GM12891	blood:	n/a	chr7:127032387-127032396
43	TAF1	chr7:127031995-127033137	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr7:127031707-127033380	GM12878	blood:	n/a	n/a
45	RCOR1	chr7:127032262-127033441	Hela-S3	cervix:	n/a	n/a
46	NFIC	chr7:127032305-127032864	GM12878	blood:	n/a	n/a
47	NR2C2	chr7:127032296-127032991	HepG2	liver:	n/a	chr7:127032764-127032771
48	MAX	chr7:127031540-127033469	NB4	blood:	n/a	chr7:127033389-127033398 chr7:127032026-127032035 chr7:127033387-127033400 chr7:127032671-127032681 chr7:127033388-127033399
49	POLR2A	chr7:127031570-127033625	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr7:127031314-127033712	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:127032423-127032473	AG09309	skin:	n/a
2	chr7:127032423-127032473	HCT-116	colon:	n/a
3	chr7:127032423-127032473	T-47D	breast:	n/a
4	chr7:127032423-127032473	AG04450	lung:	fetal
5	chr7:127032423-127032473	HRCEpiC	kidney:	n/a
6	chr7:127032423-127032473	HEEpiC	esophagus:	n/a
7	chr7:127032423-127032473	SK-N-SH_RA	brain:	n/a
8	chr7:127032423-127032473	AG10803	skin:	n/a
9	chr7:127032423-127032473	PANC-1	pancreas:	n/a
10	chr7:127032423-127032473	GM19239	blood:	n/a
11	chr7:127032423-127032473	HRE	kidney:	n/a
12	chr7:127032423-127032473	HL-60	blood:	n/a
13	chr7:127032423-127032473	AG04449	skin:	fetal
14	chr7:127032423-127032473	HAEpiC	amniotic membrane:	n/a
15	chr7:127032423-127032473	NT2-D1	testis:	n/a
16	chr7:127032423-127032473	NHBE	bronchial:	n/a
17	chr7:127032423-127032473	SK-N-MC	brain:	n/a
18	chr7:127032423-127032473	ovcar-3	ovarian:	n/a
19	chr7:127032423-127032473	HUVEC	blood vessel:	n/a
20	chr7:127032423-127032473	LNCaP	prostate:	n/a
21	chr7:127032423-127032473	HIPEpiC	eye:	n/a
22	chr7:127032423-127032473	MCF10A-Er-Src	breast:	n/a
23	chr7:127032423-127032473	RPTEC	kidney:	n/a
24	chr7:127032423-127032473	ProgFib	skin:	n/a
25	chr7:127032423-127032473	HMEC	breast:	n/a
26	chr7:127032423-127032473	H1-hESC	embryonic stem cell:	embryo
27	chr7:127032423-127032473	HEK293	kidney:	embryo
28	chr7:127032423-127032473	PFSK-1	brain:	n/a
29	chr7:127032423-127032473	PrEC	prostate:	n/a
30	chr7:127032423-127032473	ECC-1	luminal epithelium:	n/a
31	chr7:127032423-127032473	GM12878	blood:	n/a
32	chr7:127032423-127032473	U87	brain:	n/a
33	chr7:127032423-127032473	Hela-S3	cervix:	n/a
34	chr7:127032423-127032473	HPAEpiC	pulmonary alveolar:	n/a
35	chr7:127032423-127032473	CMK	blood:	n/a
36	chr7:127032423-127032473	HNPCEpiC	eye:	n/a
37	chr7:127032423-127032473	MCF-7	breast:	n/a
38	chr7:127032423-127032473	BE2_C	brain:	n/a
39	chr7:127032423-127032473	NB4	blood:	n/a
40	chr7:127032423-127032473	Caco-2	colon:	n/a
41	chr7:127032423-127032473	Jurkat	blood:	n/a
42	chr7:127032423-127032473	HRPEpiC	eye:	n/a
43	chr7:127032423-127032473	HCPEpiC	choroid plexus:	n/a
44	chr7:127032423-127032473	HCF	heart:	n/a
45	chr7:127032423-127032473	HepG2	liver:	n/a
46	chr7:127032423-127032473	NH-A	brain:	n/a
47	chr7:127032423-127032473	K562	blood:	n/a
48	chr7:127032423-127032473	Hepatocyte	liver:	n/a
49	chr7:127032423-127032473	SK-N-SH	brain:	n/a
50	chr7:127032423-127032473	BJ	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:127028627..127034604-chr7:127290902..127294330,10	K562	blood:
2	chr7:127031057..127033330-chr7:127290561..127293507,3	MCF-7	breast:
3	chr7:126892951..126894660-chr7:127031651..127034423,2	MCF-7	breast:
4	chr7:126891429..126894759-chr7:127030328..127033331,3	K562	blood:
5	chr7:127030999..127034277-chr7:127071570..127073569,4	K562	blood:
6	chr5:149829217..149829932-chr7:127032306..127032836,2	Hela-S3	cervix:
7	chr7:127029421..127032644-chr7:127225849..127230043,4	K562	blood:
8	chr7:127011403..127015656-chr7:127030018..127033626,5	MCF-7	breast:
9	chr7:127031743..127033878-chr8:109462577..109465197,2	K562	blood:
10	chr7:127029920..127034279-chr7:127291168..127294285,4	MCF-7	breast:
11	chr1:148240966..148241528-chr7:127032372..127032892,2	Hela-S3	cervix:
12	chr10:88818573..88820601-chr7:127031334..127033710,2	MCF-7	breast:
13	chr7:126985549..126992875-chr7:127029251..127034121,12	K562	blood:
14	chr7:127029926..127034103-chr7:127290516..127296284,10	K562	blood:
15	chr17:57914420..57916265-chr7:127031107..127033179,2	MCF-7	breast:
16	chr7:127030656..127034603-chr7:127225190..127230310,7	MCF-7	breast:
17	chr7:126892205..126895115-chr7:127030974..127032697,2	MCF-7	breast:
18	chr14:102553303..102554240-chr7:127032162..127032878,2	NB4	blood:
19	chr7:127030702..127032822-chr7:127225677..127228410,2	K562	blood:
20	chr7:126986612..126990415-chr7:127030676..127033732,5	MCF-7	breast:
21	chr17:80249999..80250802-chr7:127032311..127032883,2	Hela-S3	cervix:
22	chr10:101380696..101381430-chr7:127032220..127032848,2	Hela-S3	cervix:

Variant related genes	Relation type
ZNF800	TF binding region
ZNF800	CpG island
ENSG00000207501	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000260475	Chromatin interaction
ENSG00000265692	Chromatin interaction
ENSG00000164587	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000240790	Chromatin interaction
ENSG00000148672	Chromatin interaction
ENSG00000197157	Chromatin interaction
ENSG00000104412	Chromatin interaction
ENSG00000224138	Chromatin interaction
ENSG00000080824	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373113	chr7:127030941-127033489	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
2	nsv820163	chr7:127031590-127033207	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127030800-127033000	Active TSS	HMEC	breast
2	chr7:127030800-127033200	Active TSS	GM12878-XiMat	blood
3	chr7:127031000-127033200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:127031000-127033200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:127031200-127033000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:127031200-127033200	Active TSS	HSMM	muscle
7	chr7:127031200-127033400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:127031200-127033400	Active TSS	A549	lung
9	chr7:127031200-127033600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:127031200-127033800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr7:127031200-127033800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:127031200-127034000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:127031200-127034000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:127031200-127034000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr7:127031200-127034000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:127031200-127034200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:127031200-127034200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:127031200-127034200	Active TSS	Psoas Muscle	Psoas
19	chr7:127031200-127034200	Active TSS	Right Atrium	heart
20	chr7:127031400-127032600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:127031400-127033000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:127031400-127033200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr7:127031400-127033200	Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr7:127031400-127033200	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr7:127031400-127033200	Active TSS	Stomach Mucosa	stomach
26	chr7:127031400-127033200	Active TSS	Hela-S3	cervix
27	chr7:127031400-127033400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:127031400-127033400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:127031400-127033400	Active TSS	Esophagus	oesophagus
30	chr7:127031400-127033400	Active TSS	Fetal Intestine Large	intestine
31	chr7:127031400-127033400	Active TSS	Fetal Muscle Trunk	muscle
32	chr7:127031400-127033600	Active TSS	H9 Cell Line	embryonic stem cell
33	chr7:127031400-127033600	Active TSS	Gastric	stomach
34	chr7:127031400-127033800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:127031400-127034000	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr7:127031400-127034000	Active TSS	Ovary	ovary
37	chr7:127031400-127034200	Active TSS	Colon Smooth Muscle	Colon
38	chr7:127031600-127033200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:127031600-127033200	Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr7:127031600-127033200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:127031600-127033200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:127031600-127033200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr7:127031600-127033200	Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr7:127031600-127033200	Active TSS	Fetal Intestine Small	intestine
45	chr7:127031600-127033200	Active TSS	Fetal Thymus	thymus
46	chr7:127031600-127033200	Active TSS	NH-A	brain
47	chr7:127031600-127033200	Active TSS	NHEK	skin
48	chr7:127031600-127033200	Active TSS	Osteobl	bone
49	chr7:127031600-127033400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:127031600-127033400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links