Variant report

Variant	rs540203324
Chromosome Location	chr6:150519004-150519005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:
2	chr6:150518298..150521152-chr6:150523437..150526060,2	K562	blood:
3	chr6:150512430..150515646-chr6:150516901..150519316,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv12137	chr6:150518893-150519503	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604848	chr6:150518920-150519462	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150515400-150519600	Weak transcription	Fetal Brain Male	brain
4	chr6:150517400-150519800	Weak transcription	K562	blood
5	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150518000-150522200	Enhancers	Left Ventricle	heart
7	chr6:150518200-150520000	Enhancers	Right Atrium	heart
8	chr6:150518200-150520800	Active TSS	Duodenum Mucosa	Duodenum
9	chr6:150518200-150523000	Weak transcription	Stomach Mucosa	stomach
10	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
11	chr6:150518400-150521400	Weak transcription	Esophagus	oesophagus
12	chr6:150518600-150519600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:150518600-150519800	Weak transcription	Fetal Brain Female	brain
14	chr6:150518600-150519800	Weak transcription	Right Ventricle	heart
15	chr6:150518600-150520000	Weak transcription	Psoas Muscle	Psoas
16	chr6:150518600-150520000	Weak transcription	NHEK	skin
17	chr6:150518600-150521400	Weak transcription	HMEC	breast
18	chr6:150518600-150521800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:150518600-150522400	Weak transcription	Pancreas	Pancrea
20	chr6:150518600-150523200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150518600-150523200	Weak transcription	Lung	lung
22	chr6:150518800-150519800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:150518800-150519800	Weak transcription	Fetal Intestine Large	intestine
24	chr6:150518800-150520200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:150518800-150520400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:150518800-150521400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:150518800-150521600	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:150518800-150521600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:150519000-150519400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:150519000-150519400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:150519000-150520800	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links