Variant report

Variant	rs540252775
Chromosome Location	chr14:37586048-37586049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37587600	Enhancers	Hela-S3	cervix
2	chr14:37582400-37602800	Weak transcription	K562	blood
3	chr14:37583400-37586200	Weak transcription	HSMMtube	muscle
4	chr14:37583800-37586400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:37585000-37586400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:37585000-37586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:37585400-37586200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:37585400-37586200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr14:37585400-37586400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:37585400-37587000	Enhancers	HUVEC	blood vessel
11	chr14:37585600-37586200	Weak transcription	Aorta	Aorta
12	chr14:37585600-37587000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:37585800-37586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:37585800-37586800	Flanking Active TSS	A549	lung
15	chr14:37585800-37587000	Enhancers	HMEC	breast
16	chr14:37585800-37587000	Enhancers	NH-A	brain
17	chr14:37586000-37586800	Enhancers	Osteobl	bone
18	chr14:37586000-37587000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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