Variant report

Variant	rs540292590
Chromosome Location	chr1:76693428-76693429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546584	chr1:76693367-76721164	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76687400-76695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76689000-76693800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:76690000-76694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76692000-76694400	Weak transcription	HUVEC	blood vessel
5	chr1:76692200-76693800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:76692200-76696000	Enhancers	Fetal Thymus	thymus
7	chr1:76692400-76695600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:76692400-76698200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:76692600-76698000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:76692600-76698200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:76692600-76698400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:76692800-76694600	Enhancers	Fetal Heart	heart
13	chr1:76692800-76695600	Enhancers	Primary T cells from cord blood	blood
14	chr1:76692800-76695600	Enhancers	Thymus	Thymus
15	chr1:76692800-76698000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:76693000-76694600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:76693000-76694600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:76693000-76694800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:76693000-76695000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:76693400-76693600	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:76693400-76693800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:76693400-76694400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr1:76693400-76694600	Enhancers	Primary B cells from cord blood	blood
24	chr1:76693400-76695200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr1:76693400-76695400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr1:76693400-76697000	Enhancers	Fetal Lung	lung

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