Variant report

Variant	rs540325698
Chromosome Location	chr6:101037608-101037609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv463987	chr6:101036713-101078718	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv604265	chr6:101036713-101078718	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv470848	chr6:101036713-101102584	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101009000-101065600	Weak transcription	NHEK	skin
2	chr6:101011000-101080800	Weak transcription	HepG2	liver
3	chr6:101015800-101049200	Weak transcription	Esophagus	oesophagus
4	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
6	chr6:101017800-101069800	Weak transcription	Lung	lung
7	chr6:101018400-101051200	Weak transcription	Right Ventricle	heart
8	chr6:101018600-101038400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:101018600-101040800	Weak transcription	HSMMtube	muscle
10	chr6:101019000-101047800	Weak transcription	Small Intestine	intestine
11	chr6:101020400-101066200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:101027800-101049600	Weak transcription	Fetal Kidney	kidney
14	chr6:101027800-101070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:101028000-101068800	Weak transcription	Psoas Muscle	Psoas
16	chr6:101030200-101070000	Weak transcription	Aorta	Aorta
17	chr6:101031200-101048600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:101032200-101038200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
20	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:101032600-101046600	Weak transcription	Gastric	stomach
22	chr6:101032600-101047600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:101032800-101065600	Weak transcription	Colonic Mucosa	Colon
26	chr6:101033000-101048600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:101033400-101038000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:101033400-101038200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:101033400-101048400	Weak transcription	HUVEC	blood vessel
30	chr6:101033600-101057600	Weak transcription	Brain Angular Gyrus	brain
31	chr6:101033800-101037800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:101033800-101038600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:101033800-101065400	Weak transcription	Hela-S3	cervix
34	chr6:101034000-101037800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:101034000-101038000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:101034000-101039000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:101034000-101085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:101034200-101038200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:101034400-101038600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:101034400-101038600	Strong transcription	Liver	Liver
41	chr6:101034400-101043000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:101034400-101048000	Weak transcription	Fetal Stomach	stomach
43	chr6:101034400-101066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:101034400-101084200	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
46	chr6:101034600-101045200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:101034600-101048000	Weak transcription	Ovary	ovary
48	chr6:101034600-101048800	Weak transcription	Left Ventricle	heart
49	chr6:101034600-101048800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:101034600-101055000	Weak transcription	Fetal Intestine Small	intestine

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