Variant report

Variant	rs540426055
Chromosome Location	chr9:72187960-72187961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3419201	chr9:72187712-72187968	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72173800-72188400	Weak transcription	Fetal Lung	lung
2	chr9:72180400-72208400	Weak transcription	Gastric	stomach
3	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
4	chr9:72181200-72188400	Weak transcription	Liver	Liver
5	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:72181800-72188000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:72183800-72189400	Enhancers	NH-A	brain
8	chr9:72184000-72188800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:72184800-72189800	Enhancers	HUVEC	blood vessel
10	chr9:72185200-72192800	Weak transcription	Brain Anterior Caudate	brain
11	chr9:72185400-72188400	Weak transcription	Fetal Heart	heart
12	chr9:72185400-72189400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:72185400-72194000	Weak transcription	Ovary	ovary
14	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
15	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:72186000-72188600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
19	chr9:72186400-72188600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:72186800-72188000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:72186800-72188600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:72186800-72188600	Weak transcription	NHEK	skin
23	chr9:72186800-72189400	Enhancers	Fetal Muscle Leg	muscle
24	chr9:72187400-72188400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:72187400-72189400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:72187400-72189400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:72187400-72189400	Enhancers	Osteobl	bone
28	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:72187600-72188400	Weak transcription	HSMM	muscle
30	chr9:72187600-72188600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:72187600-72189400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:72187800-72188200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:72187800-72188600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:72187800-72188600	Weak transcription	Fetal Brain Male	brain
35	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial

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