Variant report

Variant	rs540473688
Chromosome Location	chr4:143617500-143617501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143610637..143613671-chr4:143616411..143618882,3	MCF-7	breast:
2	chr4:143535438..143537079-chr4:143616792..143619386,2	MCF-7	breast:
3	chr4:143393327..143398147-chr4:143615863..143619957,7	MCF-7	breast:
4	chr4:143393259..143398108-chr4:143615372..143620802,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467400	chr4:143615840-143621513	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3467401	chr4:143615840-143621513	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv441917	chr4:143615874-143619949	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv19572	chr4:143616010-143621320	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143615800-143620200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:143616000-143620600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:143616400-143620200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:143616800-143617600	Enhancers	Primary T cells from cord blood	blood
6	chr4:143616800-143618600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr4:143616800-143618600	Enhancers	Fetal Heart	heart
8	chr4:143616800-143621000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:143616800-143621600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:143617000-143617600	Enhancers	Stomach Smooth Muscle	stomach
12	chr4:143617000-143617600	Enhancers	Thymus	Thymus
13	chr4:143617000-143617800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:143617000-143617800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr4:143617000-143617800	Enhancers	Left Ventricle	heart
16	chr4:143617000-143617800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr4:143617000-143618000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:143617000-143618000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:143617000-143618000	Flanking Active TSS	Dnd41	blood
20	chr4:143617000-143618400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:143617000-143618600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr4:143617000-143618600	Enhancers	Fetal Thymus	thymus
23	chr4:143617000-143618800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr4:143617000-143624200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr4:143617200-143617800	Enhancers	Psoas Muscle	Psoas
26	chr4:143617200-143618000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:143617200-143618000	Enhancers	Aorta	Aorta
28	chr4:143617200-143618000	Enhancers	Gastric	stomach
29	chr4:143617200-143618600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:143617400-143617600	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr4:143617400-143618000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr4:143617400-143618400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr4:143617400-143619000	Enhancers	Hela-S3	cervix

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