Variant report

Variant	rs540544426
Chromosome Location	chr5:80835119-80835120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv462221	chr5:80834138-80883110	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv598751	chr5:80834138-80883110	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80803200-80835200	Weak transcription	GM12878-XiMat	blood
2	chr5:80803600-80875200	Weak transcription	Fetal Brain Female	brain
3	chr5:80820200-80851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:80821800-80836800	Weak transcription	NHDF-Ad	bronchial
5	chr5:80821800-80849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:80825200-80865200	Weak transcription	Fetal Brain Male	brain
7	chr5:80827000-80840600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:80827000-80848200	Weak transcription	Left Ventricle	heart
9	chr5:80827600-80835600	Enhancers	Primary T cells from cord blood	blood
10	chr5:80828800-80863400	Weak transcription	Fetal Lung	lung
11	chr5:80830000-80848800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:80830000-80853800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:80830200-80848600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:80830400-80845000	Weak transcription	Fetal Heart	heart
15	chr5:80830600-80840200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:80830600-80841400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:80830800-80849600	Weak transcription	Adipose Nuclei	Adipose
18	chr5:80830800-80850000	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:80831000-80845200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:80832000-80835600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr5:80833000-80835200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:80833000-80835200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:80833000-80835400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr5:80833200-80835200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr5:80833200-80835600	Enhancers	Thymus	Thymus
26	chr5:80833600-80835400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr5:80833800-80841400	Weak transcription	Stomach Mucosa	stomach
28	chr5:80834000-80836600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:80834000-80849600	Weak transcription	Brain Angular Gyrus	brain
30	chr5:80834000-80851600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:80834200-80836600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:80834200-80838600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr5:80834400-80835200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:80834400-80835200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:80834400-80835200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:80834400-80835200	Strong transcription	Fetal Kidney	kidney
37	chr5:80834400-80835200	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr5:80834400-80836000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:80834400-80838600	Genic enhancers	Dnd41	blood
40	chr5:80834400-80840200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:80834400-80867000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr5:80834800-80866400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr5:80834800-80870000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:80835000-80835600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:80835000-80835600	Genic enhancers	Fetal Thymus	thymus
46	chr5:80835000-80836200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:80835000-80852000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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