Variant report

Variant	rs540585313
Chromosome Location	chr15:58906318-58906319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58906314..58907814-chr15:99432678..99434601,2	MCF-7	breast:
2	chr15:58903672..58906413-chr15:58914641..58916719,2	K562	blood:
3	chr15:58898609..58900839-chr15:58904046..58906383,2	K562	blood:

Variant related genes	Relation type
ENSG00000140443	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58882600-58907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:58885800-58906800	Weak transcription	Fetal Brain Male	brain
4	chr15:58887200-58906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:58889800-58918800	Weak transcription	Osteobl	bone
8	chr15:58889800-58921000	Weak transcription	Ovary	ovary
9	chr15:58891000-58906800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:58894800-58906800	Weak transcription	Psoas Muscle	Psoas
12	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:58900200-58908400	Weak transcription	Hela-S3	cervix
14	chr15:58900400-58906600	Strong transcription	Dnd41	blood
15	chr15:58901000-58906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:58901600-58906800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:58901600-58906800	Weak transcription	Fetal Heart	heart
19	chr15:58901600-58913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:58902600-58906600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:58902800-58911200	Weak transcription	HMEC	breast
22	chr15:58903200-58906600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:58903200-58913400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:58903400-58906600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:58903400-58906800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:58903400-58906800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:58903400-58918600	Weak transcription	HUVEC	blood vessel
28	chr15:58903800-58914200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:58904200-58906600	Strong transcription	Primary T cells from cord blood	blood
30	chr15:58904200-58907800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:58904400-58906400	Strong transcription	HSMMtube	muscle
32	chr15:58904600-58906600	Strong transcription	Brain Hippocampus Middle	brain
33	chr15:58904600-58907000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:58904600-58907200	ZNF genes & repeats	HSMM	muscle
35	chr15:58904800-58913600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:58905000-58907200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:58905000-58907800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:58905000-58907800	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr15:58905000-58908000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
40	chr15:58905000-58908600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
41	chr15:58905000-58910400	Weak transcription	Right Ventricle	heart
42	chr15:58905000-58920800	Weak transcription	Left Ventricle	heart
43	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
44	chr15:58905200-58906400	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr15:58905200-58906800	ZNF genes & repeats	Fetal Brain Female	brain
46	chr15:58905200-58907200	ZNF genes & repeats	Fetal Lung	lung
47	chr15:58905200-58907800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:58905200-58908000	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr15:58905200-58908600	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr15:58905200-58909000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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