Variant report

Variant	rs540709276
Chromosome Location	chr1:94247476-94247477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546822	chr1:94246577-94289863	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1815663	chr1:94246577-94291252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94241000-94249000	Enhancers	Hela-S3	cervix
3	chr1:94241200-94248400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:94243000-94247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:94243600-94248400	Enhancers	Placenta	Placenta
6	chr1:94244000-94248000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:94245600-94253000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:94245800-94247800	Weak transcription	HepG2	liver
9	chr1:94245800-94248400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:94245800-94249000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:94246600-94255400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:94246800-94266600	Weak transcription	A549	lung
13	chr1:94247400-94249200	Weak transcription	HMEC	breast
14	chr1:94247400-94249200	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links