Variant report

Variant	rs540847070
Chromosome Location	chr14:56160985-56160986
allele	-/AAAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1283	chr14:56120059-56164729	Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56101800-56162800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
3	chr14:56109200-56164000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:56122400-56164800	Weak transcription	Small Intestine	intestine
5	chr14:56142800-56168400	Weak transcription	Fetal Kidney	kidney
6	chr14:56147400-56170400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:56147800-56164200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:56148000-56161800	Weak transcription	Pancreas	Pancrea
9	chr14:56148000-56174000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:56148400-56165600	Weak transcription	NHDF-Ad	bronchial
11	chr14:56151200-56165800	Weak transcription	Hela-S3	cervix
12	chr14:56152200-56162200	Weak transcription	Fetal Intestine Small	intestine
13	chr14:56152800-56164400	Weak transcription	HMEC	breast
14	chr14:56153000-56167800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:56153400-56174000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:56153600-56162400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:56153600-56163200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:56153600-56164200	Weak transcription	HSMMtube	muscle
19	chr14:56153600-56164400	Weak transcription	Brain Angular Gyrus	brain
20	chr14:56153600-56165200	Weak transcription	NH-A	brain
21	chr14:56153600-56165600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:56153600-56165600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:56153600-56165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:56153800-56161400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:56153800-56162200	Weak transcription	Fetal Intestine Large	intestine
26	chr14:56153800-56163200	Weak transcription	Colonic Mucosa	Colon
27	chr14:56153800-56164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:56153800-56164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:56153800-56164200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:56153800-56165000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:56153800-56165600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:56153800-56170600	Weak transcription	Fetal Stomach	stomach
33	chr14:56153800-56172000	Weak transcription	Esophagus	oesophagus
34	chr14:56153800-56172400	Weak transcription	Dnd41	blood
35	chr14:56153800-56173800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:56153800-56174000	Weak transcription	Brain Anterior Caudate	brain
37	chr14:56154000-56162200	Weak transcription	Ovary	ovary
38	chr14:56154000-56167800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr14:56154000-56172400	Weak transcription	Lung	lung
40	chr14:56154000-56173800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:56154000-56177800	Weak transcription	Left Ventricle	heart
42	chr14:56154000-56191000	Weak transcription	Aorta	Aorta
43	chr14:56154200-56162000	Weak transcription	Liver	Liver
44	chr14:56154200-56162200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:56154200-56163400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr14:56154400-56163800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:56154400-56177800	Weak transcription	Fetal Muscle Leg	muscle
48	chr14:56154800-56164400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:56154800-56165600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr14:56154800-56174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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