Variant report

Variant	rs540848775
Chromosome Location	chr2:33644116-33644117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33634000-33645000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:33637600-33645000	Weak transcription	NHLF	lung
3	chr2:33637800-33645000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:33638200-33645000	Weak transcription	HSMM	muscle
5	chr2:33638200-33645400	Weak transcription	HSMMtube	muscle
6	chr2:33638600-33644600	Weak transcription	A549	lung
7	chr2:33638600-33644800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:33640200-33651400	Weak transcription	Fetal Heart	heart
9	chr2:33642000-33645200	Weak transcription	Left Ventricle	heart
10	chr2:33642200-33646000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:33642400-33650400	Weak transcription	NHDF-Ad	bronchial
12	chr2:33642600-33644400	Weak transcription	HUVEC	blood vessel
13	chr2:33642600-33644800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:33642600-33644800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:33642600-33645000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:33642600-33645400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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