Variant report

Variant	rs540901866
Chromosome Location	chr1:155818884-155818885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155818345..155820226-chr1:155822747..155824958,2	K562	blood:
2	chr1:155804226..155806022-chr1:155818533..155820531,2	K562	blood:
3	chr1:155815806..155819878-chr1:155826192..155829116,4	MCF-7	breast:
4	chr1:155818594..155821262-chr1:155827766..155829417,2	K562	blood:
5	chr1:155804226..155806022-chr1:155818351..155820531,3	K562	blood:
6	chr1:155814935..155817841-chr1:155818057..155819869,2	K562	blood:

Variant related genes	Relation type
ENSG00000116580	Chromatin interaction
ENSG00000234937	Chromatin interaction
ENSG00000132718	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases
5	nsv521958	chr1:155817788-155819657	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155783600-155823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:155787600-155822000	Weak transcription	Esophagus	oesophagus
3	chr1:155789600-155822000	Weak transcription	Fetal Brain Male	brain
4	chr1:155792200-155822000	Weak transcription	Pancreas	Pancrea
5	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
6	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:155792600-155822800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:155793400-155820200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:155796800-155821200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:155796800-155822800	Weak transcription	Small Intestine	intestine
11	chr1:155798000-155822000	Weak transcription	Aorta	Aorta
12	chr1:155803800-155826000	Weak transcription	Right Atrium	heart
13	chr1:155804600-155821600	Weak transcription	NHDF-Ad	bronchial
14	chr1:155808000-155826000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:155810000-155825200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:155810400-155825400	Strong transcription	Fetal Stomach	stomach
17	chr1:155810600-155825400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr1:155811400-155825000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:155812400-155825400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:155812800-155819000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:155812800-155825400	Strong transcription	Fetal Thymus	thymus
22	chr1:155813000-155825400	Strong transcription	Thymus	Thymus
23	chr1:155813200-155826200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:155813400-155819000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:155813400-155821200	Weak transcription	Ovary	ovary
26	chr1:155813600-155819400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:155813600-155826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:155813800-155826000	Weak transcription	Right Ventricle	heart
29	chr1:155814400-155821600	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:155814800-155822000	Weak transcription	Colonic Mucosa	Colon
31	chr1:155815200-155820200	Weak transcription	Left Ventricle	heart
32	chr1:155815200-155825400	Strong transcription	Fetal Intestine Small	intestine
33	chr1:155815200-155825800	Weak transcription	Fetal Heart	heart
34	chr1:155815400-155819800	Weak transcription	Brain Angular Gyrus	brain
35	chr1:155815400-155822000	Weak transcription	Gastric	stomach
36	chr1:155815600-155821400	Weak transcription	Brain Substantia Nigra	brain
37	chr1:155815600-155822800	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:155815800-155819800	Weak transcription	Primary B cells from cord blood	blood
39	chr1:155815800-155820200	Weak transcription	Brain Anterior Caudate	brain
40	chr1:155815800-155820200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:155815800-155821600	Weak transcription	Fetal Kidney	kidney
42	chr1:155815800-155821600	Weak transcription	HMEC	breast
43	chr1:155815800-155822000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr1:155815800-155822000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:155815800-155822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr1:155815800-155822000	Weak transcription	NHLF	lung
47	chr1:155815800-155823000	Weak transcription	HSMMtube	muscle
48	chr1:155815800-155826000	Weak transcription	Psoas Muscle	Psoas
49	chr1:155816000-155819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:155816000-155819800	Weak transcription	Osteobl	bone

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