Variant report

Variant	rs541025405
Chromosome Location	chr5:177861711-177861712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:177855622..177857824-chr5:177858602..177861991,3	K562	blood:
2	chr5:177846034..177846976-chr5:177861076..177861723,3	MCF-7	breast:
3	chr5:177844557..177846538-chr5:177860811..177863618,2	K562	blood:
4	chr5:177861063..177863215-chr5:177895852..177898464,2	K562	blood:
5	chr5:177851551..177854301-chr5:177861521..177864094,2	MCF-7	breast:
6	chr5:177861655..177863245-chr5:177875652..177877153,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177856800-177861800	Weak transcription	Left Ventricle	heart
2	chr5:177856800-177887200	Weak transcription	Right Atrium	heart
3	chr5:177857000-177862600	Weak transcription	Gastric	stomach
4	chr5:177857000-177863800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:177857200-177862000	Weak transcription	Fetal Kidney	kidney
6	chr5:177859200-177862400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr5:177859200-177862600	Enhancers	Fetal Lung	lung
8	chr5:177859200-177866000	Genic enhancers	Fetal Thymus	thymus
9	chr5:177859400-177866600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:177859800-177865000	Genic enhancers	Thymus	Thymus
11	chr5:177860000-177864600	Weak transcription	Lung	lung
12	chr5:177860200-177861800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:177860200-177862200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:177860600-177861800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:177860800-177863000	Weak transcription	Dnd41	blood
16	chr5:177861000-177862600	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:177861200-177862600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:177861200-177863000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr5:177861200-177863000	Enhancers	Right Ventricle	heart
20	chr5:177861400-177862800	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr5:177861400-177863000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:177861600-177861800	Bivalent Enhancer	Adipose Nuclei	Adipose
23	chr5:177861600-177861800	Enhancers	Spleen	Spleen
24	chr5:177861600-177862000	Enhancers	Brain Anterior Caudate	brain
25	chr5:177861600-177862000	Enhancers	Psoas Muscle	Psoas
26	chr5:177861600-177862200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr5:177861600-177862600	Enhancers	Brain Angular Gyrus	brain
28	chr5:177861600-177862600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr5:177861600-177862600	Enhancers	Fetal Heart	heart
30	chr5:177861600-177862600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:177861600-177863000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr5:177861600-177870000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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