Variant report

Variant	rs541119557
Chromosome Location	chr8:98997797-98997798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:98994950..98998234-chr8:99001793..99004607,3	K562	blood:
2	chr8:98992573..98995424-chr8:98996000..98998679,2	MCF-7	breast:
3	chr8:98929668..98932562-chr8:98996810..98999331,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1801513	chr8:98996645-99009024	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98987400-98998400	Weak transcription	Pancreas	Pancrea
2	chr8:98988000-99011800	Weak transcription	Aorta	Aorta
3	chr8:98991000-98997800	Enhancers	Osteobl	bone
4	chr8:98992200-98998200	Enhancers	NHLF	lung
5	chr8:98992600-99019400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:98994200-99014800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:98994400-99003200	Weak transcription	Brain Substantia Nigra	brain
8	chr8:98994600-98998000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:98994600-99008200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:98994600-99008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:98994600-99014200	Weak transcription	Ovary	ovary
12	chr8:98995200-98998200	Enhancers	NHDF-Ad	bronchial
13	chr8:98995200-99008000	Weak transcription	Fetal Stomach	stomach
14	chr8:98995800-98997800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:98995800-98997800	Enhancers	A549	lung
16	chr8:98995800-99003400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:98996000-98998200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:98996200-98997800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:98996400-98998200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:98996400-99006000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:98996600-99006800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr8:98996800-98997800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr8:98996800-98997800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr8:98997000-98997800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr8:98997000-98997800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:98997000-98997800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr8:98997000-98997800	Enhancers	NH-A	brain
28	chr8:98997000-99001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:98997000-99002400	Weak transcription	HMEC	breast
30	chr8:98997000-99002400	Weak transcription	NHEK	skin
31	chr8:98997000-99003000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:98997200-98997800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr8:98997400-98998000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:98997600-98997800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:98997600-98998600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:98997600-99003200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:98997600-99003400	Weak transcription	Brain Hippocampus Middle	brain

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