Variant report

Variant	rs541148397
Chromosome Location	chr9:72091680-72091681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72086703..72089641-chr9:72090516..72093121,4	MCF-7	breast:
2	chr9:72089155..72091732-chr9:72106824..72109478,2	MCF-7	breast:
3	chr9:72089279..72091764-chr9:72373318..72374835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229312	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037109	chr9:72040184-72120270	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430067	chr9:72080989-72116806	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1037298	chr9:72085974-72118434	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv614567	chr9:72089820-72118767	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2755051	chr9:72090806-72116806	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1041401	chr9:72090806-72118434	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1035814	chr9:72090806-72120265	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv430068	chr9:72090806-72134376	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2756404	chr9:72090846-72114546	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2764174	chr9:72091267-72120277	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv515519	chr9:72091413-72118962	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv614568	chr9:72091413-72118962	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv893433	chr9:72091413-72127572	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv466399	chr9:72091413-72134376	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv614569	chr9:72091413-72134376	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv893434	chr9:72091413-72134376	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv893435	chr9:72091413-72147700	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv8523	chr9:72091539-72127386	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72086600-72091800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:72087800-72101400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:72088000-72096800	Weak transcription	Liver	Liver
4	chr9:72089000-72092200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:72089200-72091800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:72089200-72092000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:72089400-72092000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:72089400-72092000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:72089400-72092200	Enhancers	Fetal Thymus	thymus
10	chr9:72089800-72091800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr9:72089800-72092000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:72089800-72092000	Enhancers	Stomach Mucosa	stomach
13	chr9:72090000-72091800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr9:72090200-72092000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr9:72090400-72091800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:72090400-72092000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:72090600-72091800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:72090800-72091800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:72090800-72091800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:72091000-72091800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:72091000-72092000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:72091000-72092000	Enhancers	Esophagus	oesophagus
23	chr9:72091000-72092000	Enhancers	Fetal Brain Female	brain
24	chr9:72091000-72092200	Enhancers	Primary T cells from cord blood	blood
25	chr9:72091400-72091800	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:72091400-72091800	Enhancers	Brain Anterior Caudate	brain
27	chr9:72091400-72092000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr9:72091400-72092000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr9:72091400-72092000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr9:72091600-72091800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr9:72091600-72091800	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:72091600-72092000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr9:72091600-72092000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:72091600-72092000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:72091600-72092000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:72091600-72092000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr9:72091600-72092000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr9:72091600-72092000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:72091600-72092000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:72091600-72092000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr9:72091600-72092000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:72091600-72092000	Enhancers	Colonic Mucosa	Colon
43	chr9:72091600-72092000	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr9:72091600-72092000	Enhancers	NHEK	skin
45	chr9:72091600-72092200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links