Variant report

Variant	rs541248949
Chromosome Location	chr5:15594204-15594205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15578200-15596200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:15578200-15600200	Weak transcription	Left Ventricle	heart
3	chr5:15581000-15604400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:15581600-15603400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:15584000-15599200	Weak transcription	HSMMtube	muscle
6	chr5:15585000-15594600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:15585000-15604000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:15585000-15606400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:15585000-15630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:15585200-15594400	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:15585200-15600000	Weak transcription	HSMM	muscle
12	chr5:15585200-15601000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:15585200-15602000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:15585200-15605200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:15585800-15594600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:15586000-15619800	Weak transcription	NHLF	lung
17	chr5:15586400-15598800	Weak transcription	Aorta	Aorta
18	chr5:15587400-15596600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:15587400-15600200	Weak transcription	Lung	lung
20	chr5:15587800-15601000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:15587800-15601000	Weak transcription	Brain Anterior Caudate	brain
22	chr5:15588200-15598200	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:15588200-15598800	Weak transcription	Brain Substantia Nigra	brain
24	chr5:15588200-15605400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:15588400-15600400	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:15588400-15612600	Weak transcription	NHDF-Ad	bronchial
27	chr5:15588800-15603600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:15590800-15605000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:15593200-15594400	Weak transcription	Fetal Heart	heart
30	chr5:15593400-15594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:15593400-15606000	Weak transcription	HUVEC	blood vessel
32	chr5:15593400-15633400	Weak transcription	Fetal Lung	lung
33	chr5:15593600-15594400	Weak transcription	Ovary	ovary
34	chr5:15593600-15600000	Weak transcription	Fetal Stomach	stomach
35	chr5:15593600-15606200	Weak transcription	Fetal Brain Male	brain
36	chr5:15593600-15606400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:15593800-15601000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:15594200-15594600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:15594200-15595000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:15594200-15595200	Enhancers	Fetal Kidney	kidney

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