Variant report

Variant	rs541262538
Chromosome Location	chr13:76282658-76282659
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76271400-76286000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:76279400-76286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:76279400-76288600	Weak transcription	Psoas Muscle	Psoas
5	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
6	chr13:76280400-76285600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:76280400-76286400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:76280400-76287800	Weak transcription	Stomach Mucosa	stomach
9	chr13:76280400-76289800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:76280400-76289800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:76280600-76285800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:76280600-76286400	Weak transcription	NHLF	lung
13	chr13:76280600-76287200	Weak transcription	NHDF-Ad	bronchial
14	chr13:76280600-76287400	Weak transcription	NH-A	brain
15	chr13:76280600-76288000	Weak transcription	HSMMtube	muscle
16	chr13:76280800-76289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:76281000-76287400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:76281000-76287800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:76281600-76285600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:76282200-76282800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:76282200-76282800	Strong transcription	HSMM	muscle
22	chr13:76282400-76282800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:76282400-76282800	Genic enhancers	Osteobl	bone
24	chr13:76282400-76286000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr13:76282600-76282800	Enhancers	Small Intestine	intestine
26	chr13:76282600-76283000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:76282600-76286200	Weak transcription	Hela-S3	cervix

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