Variant report

Variant	rs541313866
Chromosome Location	chr15:79090980-79090981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3326516	chr15:79090897-79093445	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79072000-79096600	Weak transcription	Brain Substantia Nigra	brain
2	chr15:79072000-79096800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:79072800-79102400	Weak transcription	Fetal Kidney	kidney
4	chr15:79077200-79096600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:79078200-79093200	Strong transcription	Fetal Stomach	stomach
6	chr15:79078400-79091800	Weak transcription	Gastric	stomach
7	chr15:79079400-79091000	Weak transcription	HUVEC	blood vessel
8	chr15:79080400-79096200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:79080800-79095200	Weak transcription	Fetal Intestine Large	intestine
10	chr15:79082800-79096200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:79082800-79102200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:79083200-79102000	Weak transcription	Fetal Heart	heart
13	chr15:79083800-79102400	Weak transcription	Aorta	Aorta
14	chr15:79086000-79091000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:79086200-79091400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:79088200-79094000	Weak transcription	Lung	lung
17	chr15:79088200-79096800	Weak transcription	Brain Angular Gyrus	brain
18	chr15:79088600-79093400	Weak transcription	Spleen	Spleen
19	chr15:79088600-79096400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:79088800-79102600	Weak transcription	Ovary	ovary
21	chr15:79089200-79091200	Enhancers	Hela-S3	cervix
22	chr15:79089400-79096000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:79089600-79091200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:79089600-79091400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:79089800-79091000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:79089800-79091200	Enhancers	HMEC	breast
27	chr15:79090000-79091000	Enhancers	Placenta	Placenta
28	chr15:79090000-79091200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr15:79090000-79091200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:79090000-79091200	Enhancers	Right Atrium	heart
31	chr15:79090000-79096400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:79090200-79091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:79090200-79091200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:79090200-79091200	Enhancers	NHDF-Ad	bronchial
35	chr15:79090200-79096400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:79090200-79101000	Weak transcription	Fetal Lung	lung
37	chr15:79090200-79101000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:79090400-79091000	Enhancers	Adipose Nuclei	Adipose
39	chr15:79090400-79091000	Enhancers	NHEK	skin
40	chr15:79090400-79091200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:79090400-79091200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:79090400-79091200	Enhancers	Fetal Muscle Leg	muscle
43	chr15:79090400-79091200	Enhancers	NHLF	lung
44	chr15:79090400-79091200	Enhancers	Osteobl	bone
45	chr15:79090400-79095600	Weak transcription	Fetal Intestine Small	intestine
46	chr15:79090400-79096200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:79090400-79096200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:79090400-79096200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:79090400-79096400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:79090400-79096400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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