Variant report

Variant	rs541526111
Chromosome Location	chr20:25665867-25665868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170191	Chromatin interaction
ENSG00000213742	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25656600-25667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr20:25657200-25666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:25657200-25667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:25657200-25674200	Weak transcription	Fetal Heart	heart
5	chr20:25657400-25666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:25657400-25666000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:25657400-25666000	Weak transcription	Psoas Muscle	Psoas
8	chr20:25657400-25666600	Weak transcription	Pancreas	Pancrea
9	chr20:25657400-25676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr20:25657600-25666000	Weak transcription	Brain Substantia Nigra	brain
11	chr20:25657600-25666000	Weak transcription	Esophagus	oesophagus
12	chr20:25657600-25666000	Weak transcription	Gastric	stomach
13	chr20:25657600-25666000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr20:25657600-25666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:25657600-25667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr20:25657600-25672200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr20:25657600-25672600	Weak transcription	Fetal Brain Male	brain
18	chr20:25657600-25676000	Weak transcription	Stomach Mucosa	stomach
19	chr20:25657600-25676200	Weak transcription	Hela-S3	cervix
20	chr20:25657600-25676200	Weak transcription	K562	blood
21	chr20:25657600-25676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr20:25657800-25667000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr20:25657800-25667200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr20:25657800-25676000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr20:25657800-25676200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr20:25657800-25676200	Weak transcription	Colonic Mucosa	Colon
27	chr20:25657800-25676200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr20:25658000-25667200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr20:25658200-25676200	Weak transcription	Fetal Kidney	kidney
30	chr20:25658400-25676200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr20:25658600-25666000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr20:25658800-25676200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr20:25659000-25676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr20:25659600-25666000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr20:25659600-25666000	Weak transcription	Aorta	Aorta
36	chr20:25659600-25666000	Weak transcription	Fetal Intestine Small	intestine
37	chr20:25659600-25667600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr20:25660600-25676000	Weak transcription	HUVEC	blood vessel
39	chr20:25661000-25666000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr20:25662000-25666000	Weak transcription	Brain Angular Gyrus	brain
41	chr20:25662200-25666000	Weak transcription	Lung	lung
42	chr20:25662200-25666000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr20:25662200-25672000	Weak transcription	NH-A	brain
44	chr20:25662400-25666000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr20:25662400-25666000	Weak transcription	NHDF-Ad	bronchial
46	chr20:25662400-25676000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr20:25662600-25666000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr20:25662600-25666000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr20:25662600-25666200	Weak transcription	Colon Smooth Muscle	Colon
50	chr20:25662600-25672200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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