Variant report

Variant	rs541655715
Chromosome Location	chr11:18723031-18723032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18722257..18724313-chr11:18725395..18727849,2	K562	blood:
2	chr11:18719268..18720951-chr11:18721936..18724231,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151117	Chromatin interaction
ENSG00000179057	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv983163	chr11:18702181-18736146	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv897028	chr11:18714623-18770822	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18720800-18727000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:18721000-18727400	Weak transcription	Aorta	Aorta
3	chr11:18721200-18726600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:18721400-18723200	Weak transcription	Thymus	Thymus
5	chr11:18721400-18726200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:18721400-18726400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:18721400-18726800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:18721400-18726800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:18721400-18726800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:18721600-18724800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:18721600-18725800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:18721600-18725800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:18721600-18726600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:18721600-18726800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:18721600-18727000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:18721800-18725400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:18721800-18726400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:18721800-18726400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:18721800-18726800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:18721800-18727000	Weak transcription	Colonic Mucosa	Colon
21	chr11:18722000-18723200	Enhancers	Adipose Nuclei	Adipose
22	chr11:18722000-18723200	Weak transcription	Fetal Kidney	kidney
23	chr11:18722000-18725400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:18722000-18725400	Weak transcription	Fetal Heart	heart
25	chr11:18722000-18725600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:18722000-18726600	Weak transcription	Brain Germinal Matrix	brain
27	chr11:18722000-18727400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:18722200-18723200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:18722200-18726400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:18722200-18726400	Weak transcription	Esophagus	oesophagus
31	chr11:18722200-18726400	Weak transcription	Psoas Muscle	Psoas
32	chr11:18722200-18726600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:18722200-18726800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:18722400-18723200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:18722400-18723800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:18722400-18724800	Weak transcription	HSMM	muscle
37	chr11:18722400-18726400	Weak transcription	Stomach Mucosa	stomach
38	chr11:18722400-18726600	Weak transcription	Fetal Brain Male	brain
39	chr11:18722400-18726800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:18722400-18726800	Weak transcription	Pancreas	Pancrea
41	chr11:18722600-18723400	Genic enhancers	Ovary	ovary
42	chr11:18722600-18723600	Strong transcription	Left Ventricle	heart
43	chr11:18722600-18724200	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:18722600-18724400	Genic enhancers	Placenta	Placenta
45	chr11:18722600-18724800	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr11:18722600-18726800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:18722600-18727200	Weak transcription	Lung	lung
48	chr11:18722800-18723200	Weak transcription	HSMMtube	muscle
49	chr11:18722800-18723800	Strong transcription	Fetal Intestine Large	intestine
50	chr11:18722800-18724400	Strong transcription	Fetal Intestine Small	intestine

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