Variant report

Variant	rs541660077
Chromosome Location	chr1:94918141-94918142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94901652..94904489-chr1:94917080..94919308,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv546851	chr1:94916649-94941376	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94908600-94918800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:94910600-94928600	Weak transcription	A549	lung
3	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
4	chr1:94914200-94918800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:94914400-94918200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr1:94914400-94918200	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr1:94914400-94918800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:94914400-94918800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr1:94914400-94918800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:94914600-94918800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr1:94914600-94918800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr1:94914600-94918800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr1:94914600-94920000	ZNF genes & repeats	Fetal Intestine Large	intestine
15	chr1:94914800-94985800	Weak transcription	NHLF	lung
16	chr1:94915400-94929800	Weak transcription	Hela-S3	cervix
17	chr1:94915400-94930400	Weak transcription	Brain Anterior Caudate	brain
18	chr1:94915400-94934000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
20	chr1:94915800-94918200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:94915800-94924600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:94915800-94925400	Weak transcription	Fetal Kidney	kidney
23	chr1:94915800-94925400	Weak transcription	HMEC	breast
24	chr1:94915800-94929400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:94915800-94930600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:94915800-94935000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:94915800-94955400	Weak transcription	NHDF-Ad	bronchial
28	chr1:94915800-94956600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:94916000-94918400	Strong transcription	Fetal Thymus	thymus
30	chr1:94916000-94921600	Weak transcription	Left Ventricle	heart
31	chr1:94916000-94923200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:94916000-94923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:94916000-94928400	Weak transcription	Brain Substantia Nigra	brain
34	chr1:94916000-94928600	Weak transcription	Colonic Mucosa	Colon
35	chr1:94916000-94930000	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:94916000-94932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:94916000-94941800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:94916000-94957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr1:94916000-94969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:94916000-94970000	Weak transcription	Ovary	ovary
41	chr1:94916000-94970000	Weak transcription	Spleen	Spleen
42	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
43	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
44	chr1:94916200-94923000	Weak transcription	Aorta	Aorta
45	chr1:94916200-94923400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr1:94916200-94968400	Weak transcription	Gastric	stomach
47	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:94916200-94974200	Weak transcription	Lung	lung
49	chr1:94916400-94923600	Weak transcription	Placenta	Placenta
50	chr1:94916400-94925800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links