Variant report

Variant	rs541692975
Chromosome Location	chr6:167163015-167163016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv1808159	chr6:167151463-167163093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv1792808	chr6:167155187-167164571	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv605261	chr6:167156675-167163207	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3406220	chr6:167160987-167164535	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3491979	chr6:167161262-167164310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1797660	chr6:167161571-167163093	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1799598	chr6:167161571-167163093	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1806327	chr6:167161571-167163093	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv605263	chr6:167161571-167163093	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv605264	chr6:167161571-167163148	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv605265	chr6:167161571-167163207	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1801953	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv605266	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv1798769	chr6:167161571-167165786	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv605267	chr6:167161571-167165786	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3491980	chr6:167161642-167164073	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv12814	chr6:167161735-167163265	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv2507832	chr6:167161748-167163630	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv3491981	chr6:167161759-167163542	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3491982	chr6:167161759-167163542	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv605274	chr6:167162077-167163027	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv605275	chr6:167162077-167163093	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv605276	chr6:167162077-167163148	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv605277	chr6:167162077-167163207	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv605278	chr6:167162077-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv605279	chr6:167162077-167165786	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv605282	chr6:167162129-167163027	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv605283	chr6:167162129-167163093	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv605284	chr6:167162129-167163148	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv605285	chr6:167162129-167163207	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv605290	chr6:167162181-167163027	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv605291	chr6:167162181-167163093	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv605292	chr6:167162181-167163148	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv605293	chr6:167162181-167163207	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv1801282	chr6:167162181-167164571	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	esv1834187	chr6:167162181-167164571	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv605294	chr6:167162181-167164571	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv605296	chr6:167162283-167163027	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv605297	chr6:167162283-167163093	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv605298	chr6:167162283-167163148	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv605299	chr6:167162283-167163207	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167157600-167163600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:167157600-167164200	Weak transcription	Fetal Kidney	kidney
3	chr6:167157800-167163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:167157800-167163800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:167157800-167163800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:167157800-167164200	Weak transcription	HSMM	muscle
7	chr6:167160000-167164600	Weak transcription	HSMMtube	muscle
8	chr6:167161600-167163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:167161600-167163400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:167161600-167164600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:167161800-167163200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:167161800-167163200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:167161800-167163400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:167161800-167163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:167161800-167163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:167161800-167163400	Weak transcription	NH-A	brain
17	chr6:167161800-167163600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:167161800-167164000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:167162000-167163200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:167162000-167163200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:167162000-167163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:167162000-167163200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:167162000-167163200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:167162000-167163200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:167162000-167163200	Weak transcription	Fetal Thymus	thymus
26	chr6:167162000-167163600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:167162000-167163600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:167162000-167163800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:167162000-167163800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:167162000-167164000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:167162000-167164400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:167163000-167163200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:167163000-167164800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:167163000-167165200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:167163000-167165600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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