Variant report

Variant	rs541901805
Chromosome Location	chr4:120013854-120013855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3523757	chr4:120013679-120014219	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3466077	chr4:120013680-120014216	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3523759	chr4:120013708-120014233	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3404616	chr4:120013726-120014198	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3523760	chr4:120013730-120014159	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3466074	chr4:120013732-120014198	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3523758	chr4:120013745-120014177	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3466076	chr4:120013748-120014150	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3466078	chr4:120013809-120014134	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3523761	chr4:120013809-120014134	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv291815	chr4:120013817-120014140	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120003400-120014200	Weak transcription	Left Ventricle	heart
2	chr4:120003400-120014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:120003600-120014600	Weak transcription	Right Atrium	heart
4	chr4:120009000-120017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:120009200-120014200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:120009200-120014200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:120009200-120019000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:120009400-120014400	Weak transcription	NHEK	skin
9	chr4:120009400-120014600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:120013000-120015400	Enhancers	Stomach Mucosa	stomach
11	chr4:120013200-120014400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:120013200-120015200	Enhancers	HepG2	liver
13	chr4:120013400-120014600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:120013600-120014000	Weak transcription	Pancreas	Pancrea
15	chr4:120013600-120014200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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