Variant report

Variant	rs541998777
Chromosome Location	chr5:97912270-97912271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv980701	chr5:97912230-97914249	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97907400-97912400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:97909200-97912600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97912000-97912400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:97912000-97912400	ZNF genes & repeats	Gastric	stomach
5	chr5:97912000-97912400	ZNF genes & repeats	Pancreas	Pancrea
6	chr5:97912000-97912400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
7	chr5:97912000-97912600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:97912000-97912600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:97912000-97912600	ZNF genes & repeats	Right Atrium	heart
10	chr5:97912000-97912600	Enhancers	Dnd41	blood
11	chr5:97912200-97912400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr5:97912200-97912400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:97912200-97912400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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