Variant report

Variant	rs542198960
Chromosome Location	chr10:50730116-50730117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50727908..50731629-chr10:50735183..50738136,3	MCF-7	breast:
2	chr10:50728212..50731102-chr10:50742607..50744631,2	K562	blood:
3	chr10:50729482..50733326-chr10:50734602..50739448,5	K562	blood:

Variant related genes	Relation type
ENSG00000225830	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1051636	chr10:50675292-50732280	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv933981	chr10:50730049-50732868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50686600-50731000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:50696400-50731800	Weak transcription	Small Intestine	intestine
3	chr10:50707000-50732200	Weak transcription	NHDF-Ad	bronchial
4	chr10:50707600-50735600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:50715000-50732200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50716200-50731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:50717200-50731200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:50717200-50736200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:50717200-50746000	Weak transcription	Fetal Heart	heart
10	chr10:50717400-50737000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:50717600-50730600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:50717600-50731600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:50720400-50746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:50721600-50734800	Weak transcription	A549	lung
15	chr10:50723000-50734400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:50723000-50741000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:50723200-50741000	Strong transcription	Primary T cells from cord blood	blood
18	chr10:50723200-50741000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:50723200-50741000	Strong transcription	HMEC	breast
20	chr10:50723200-50741800	Strong transcription	Osteobl	bone
21	chr10:50723400-50731200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:50723400-50739600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:50723400-50741000	Strong transcription	Fetal Intestine Large	intestine
24	chr10:50723400-50741000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:50723400-50741600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:50723400-50741600	Strong transcription	NHEK	skin
27	chr10:50723600-50741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:50723800-50731800	Weak transcription	NHLF	lung
29	chr10:50724200-50732200	Weak transcription	Pancreas	Pancrea
30	chr10:50724400-50734800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:50724600-50732200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:50724800-50731400	Weak transcription	NH-A	brain
33	chr10:50725000-50746200	Weak transcription	Psoas Muscle	Psoas
34	chr10:50725200-50731600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:50725400-50733000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:50725600-50731200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:50725600-50731200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:50725600-50732200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:50726000-50730200	Strong transcription	Fetal Intestine Small	intestine
40	chr10:50726200-50730200	Strong transcription	Fetal Stomach	stomach
41	chr10:50726600-50731200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:50726600-50732000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:50726600-50734000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:50726800-50731800	Weak transcription	Lung	lung
45	chr10:50726800-50739600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:50727000-50731200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:50727600-50731000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:50727600-50734000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr10:50727800-50730200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:50727800-50732000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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