Variant report

Variant	rs542210343
Chromosome Location	chr18:24504991-24504992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv962502	chr18:24504514-24513317	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24500000-24506600	Weak transcription	Brain Substantia Nigra	brain
2	chr18:24503200-24520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr18:24503800-24505000	Enhancers	Gastric	stomach
4	chr18:24504000-24518600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:24504800-24505000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:24504800-24505000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:24504800-24505000	Enhancers	Pancreas	Pancrea
8	chr18:24504800-24505600	Enhancers	Fetal Stomach	stomach
9	chr18:24504800-24505600	Enhancers	Ovary	ovary
10	chr18:24504800-24507200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr18:24504800-24509200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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