Variant report

Variant	rs542285929
Chromosome Location	chr1:76901840-76901841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv462006	chr1:76826279-77042405	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv546585	chr1:76826279-77042405	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv274979	chr1:76899464-76905352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3452340	chr1:76900422-76903543	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3452341	chr1:76900422-76903543	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv823231	chr1:76900658-76903328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv823242	chr1:76900890-76903328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76900000-76905200	Weak transcription	Fetal Lung	lung
2	chr1:76901600-76902000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76901600-76902200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:76901800-76902000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:76901800-76902000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:76901800-76902000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links