Variant report

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3388405	chr4:141939352-141941400	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141925200-141942200	Weak transcription	Aorta	Aorta
2	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:141934000-141941400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:141937200-141944000	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:141937600-141942800	Weak transcription	Right Atrium	heart
6	chr4:141937800-141941200	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:141938200-141940600	Enhancers	Colon Smooth Muscle	Colon
8	chr4:141938200-141941400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:141938200-141942800	Weak transcription	Right Ventricle	heart
10	chr4:141938400-141941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:141938600-141941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:141938800-141941600	Weak transcription	NHLF	lung
13	chr4:141939200-141940800	Enhancers	Fetal Heart	heart
14	chr4:141939400-141942600	Enhancers	Fetal Brain Male	brain
15	chr4:141939600-141942000	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:141940000-141941000	Weak transcription	Fetal Brain Female	brain
17	chr4:141940000-141941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:141940000-141941400	Weak transcription	Left Ventricle	heart
19	chr4:141940000-141941400	Weak transcription	Ovary	ovary
20	chr4:141940200-141940600	Weak transcription	Fetal Stomach	stomach

Quick Search: