Variant report

Variant	rs542392545
Chromosome Location	chr20:23027844-23027845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:22937256..22939082-chr20:23027729..23030001,2	MCF-7	breast:
2	chr20:23014536..23017577-chr20:23027797..23030031,3	MCF-7	breast:
3	chr20:23025165..23029019-chr20:23031172..23033319,4	K562	blood:
4	chr20:23020985..23023221-chr20:23027756..23029605,2	MCF-7	breast:
5	chr20:22981576..22983427-chr20:23027736..23029557,2	MCF-7	breast:
6	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

Variant related genes	Relation type
ENSG00000132671	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482065	chr20:23026271-23030301	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
2	chr20:23024200-23028200	Weak transcription	Pancreas	Pancrea
3	chr20:23024600-23031400	Weak transcription	K562	blood
4	chr20:23025800-23028000	Weak transcription	Spleen	Spleen
5	chr20:23025800-23028400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:23026000-23032400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr20:23026400-23028400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
8	chr20:23026600-23028200	Enhancers	Stomach Mucosa	stomach
9	chr20:23026600-23029600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr20:23026600-23030400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr20:23026800-23028000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr20:23026800-23028000	Enhancers	Placenta	Placenta
13	chr20:23026800-23028200	Active TSS	Right Ventricle	heart
14	chr20:23026800-23028200	Enhancers	HMEC	breast
15	chr20:23026800-23028400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr20:23026800-23029000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
17	chr20:23026800-23032000	Active TSS	Left Ventricle	heart
18	chr20:23027000-23028000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr20:23027000-23028000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr20:23027000-23028400	Active TSS	Gastric	stomach
21	chr20:23027000-23029200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
22	chr20:23027000-23029600	Flanking Active TSS	NHEK	skin
23	chr20:23027200-23028200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr20:23027200-23028400	Bivalent/Poised TSS	NH-A	brain
25	chr20:23027200-23028600	Bivalent Enhancer	Fetal Thymus	thymus
26	chr20:23027400-23028000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
27	chr20:23027400-23028200	Active TSS	Esophagus	oesophagus
28	chr20:23027400-23028200	Active TSS	Psoas Muscle	Psoas
29	chr20:23027400-23028200	Active TSS	A549	lung
30	chr20:23027400-23031800	Active TSS	Right Atrium	heart
31	chr20:23027400-23032400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr20:23027600-23028000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
33	chr20:23027600-23028000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr20:23027600-23028000	Flanking Active TSS	HSMMtube	muscle
35	chr20:23027600-23028200	Bivalent Enhancer	Fetal Intestine Large	intestine
36	chr20:23027600-23031800	Active TSS	HSMM	muscle
37	chr20:23027800-23028000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
38	chr20:23027800-23028000	Bivalent/Poised TSS	Fetal Brain Male	brain
39	chr20:23027800-23028000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
40	chr20:23027800-23028000	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr20:23027800-23028000	Bivalent Enhancer	Fetal Stomach	stomach
42	chr20:23027800-23028000	Flanking Active TSS	NHDF-Ad	bronchial
43	chr20:23027800-23028200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr20:23027800-23028200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr20:23027800-23028400	Active TSS	NHLF	lung
46	chr20:23027800-23028600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
47	chr20:23027800-23028600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
48	chr20:23027800-23029400	Flanking Active TSS	Lung	lung
49	chr20:23027800-23031200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links