Variant report

Variant	rs542400777
Chromosome Location	chr6:100989894-100989895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv981170	chr6:100988799-100994802	Weak transcription Strong transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100952800-100997400	Weak transcription	A549	lung
2	chr6:100955800-100991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:100957400-100992400	Weak transcription	Small Intestine	intestine
4	chr6:100960600-100990200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:100961000-100991200	Weak transcription	HSMMtube	muscle
7	chr6:100961000-100992000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:100961000-100997200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:100964000-100990800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:100964200-101020000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:100964800-100998400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:100965200-100990200	Weak transcription	Left Ventricle	heart
13	chr6:100965200-101000800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:100965200-101011400	Weak transcription	Pancreas	Pancrea
15	chr6:100965400-100990400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:100965400-100991800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:100965400-101005000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:100965600-101033600	Weak transcription	Ovary	ovary
19	chr6:100966000-101002400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:100966200-100991000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:100966200-100996800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:100978200-101008200	Weak transcription	NHDF-Ad	bronchial
23	chr6:100978600-101019400	Weak transcription	HMEC	breast
24	chr6:100979200-100991400	Weak transcription	Liver	Liver
25	chr6:100979800-101018200	Weak transcription	Primary T cells from cord blood	blood
26	chr6:100981800-100990000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:100981800-101001400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:100984800-100991200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:100984800-101000400	Weak transcription	HepG2	liver
30	chr6:100986400-101005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:100987200-100991000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:100987600-100990800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:100987600-100997000	Weak transcription	HSMM	muscle
34	chr6:100988000-101019000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:100988200-100990000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:100988200-100995000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:100988200-100997200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:100988200-100997200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:100988200-100997200	Weak transcription	Osteobl	bone
40	chr6:100988200-100998400	Weak transcription	HUVEC	blood vessel
41	chr6:100988200-101001800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:100988200-101018800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
45	chr6:100988400-100990200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:100988400-100991000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:100988400-100997000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:100988400-101005000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:100988800-100994600	Weak transcription	Placenta	Placenta
50	chr6:100988800-101008400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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