Variant report

Variant	rs542709879
Chromosome Location	chr5:98358389-98358390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98356545..98359049-chr5:98366364..98368367,2	K562	blood:
2	chr5:98354255..98355887-chr5:98357343..98359494,2	K562	blood:
3	chr5:98262156..98264317-chr5:98355438..98358771,4	K562	blood:
4	chr5:98250951..98253126-chr5:98356611..98358893,2	K562	blood:

Variant related genes	Relation type
ENSG00000153922	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1794778	chr5:98345182-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1825119	chr5:98345182-98358852	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98353600-98361600	Weak transcription	Small Intestine	intestine
2	chr5:98355000-98358400	Enhancers	Fetal Intestine Small	intestine
3	chr5:98355000-98358600	Enhancers	Fetal Intestine Large	intestine
4	chr5:98355600-98358400	Enhancers	HepG2	liver
5	chr5:98356000-98360600	Weak transcription	Colonic Mucosa	Colon
6	chr5:98356400-98360400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:98356400-98360400	Weak transcription	GM12878-XiMat	blood
8	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:98356400-98361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:98356400-98361200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:98356400-98361200	Weak transcription	Fetal Stomach	stomach
13	chr5:98356400-98361600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:98356400-98361800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:98356400-98362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:98356800-98361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:98356800-98361000	Weak transcription	A549	lung
18	chr5:98356800-98361000	Weak transcription	HUVEC	blood vessel
19	chr5:98356800-98361200	Weak transcription	Adipose Nuclei	Adipose
20	chr5:98357000-98360200	Weak transcription	Liver	Liver
21	chr5:98357000-98360400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:98357000-98361200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr5:98357000-98362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:98357200-98360200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr5:98357400-98360200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr5:98357400-98368400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr5:98357600-98358800	Enhancers	Stomach Mucosa	stomach
28	chr5:98358000-98358400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr5:98358200-98360000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:98358200-98366800	Weak transcription	K562	blood

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