Variant report

Variant	rs542865071
Chromosome Location	chr6:150920691-150920692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:150920140-150920991	GM12878	blood:	n/a	n/a
2	KAP1	chr6:150920064-150920925	HEK293	kidney:	n/a	n/a
3	BHLHE40	chr6:150920401-150921055	GM12878	blood:	n/a	n/a
4	MAFK	chr6:150920563-150920850	HepG2	liver:	n/a	n/a
5	MAZ	chr6:150920387-150921268	GM12878	blood:	n/a	chr6:150920861-150920871
6	MXI1	chr6:150920242-150920756	GM12878	blood:	n/a	n/a
7	EBF1	chr6:150920375-150920800	GM12878	blood:	n/a	n/a
8	MAFF	chr6:150920622-150920844	HepG2	liver:	n/a	chr6:150920722-150920740
9	MAX	chr6:150920456-150921029	GM12878	blood:	n/a	chr6:150920861-150920871
10	MAFK	chr6:150920587-150920861	HepG2	liver:	n/a	n/a
11	MAFK	chr6:150920565-150920826	IMR90	lung:	n/a	n/a
12	SPI1	chr6:150920661-150921333	GM12878	blood:	n/a	chr6:150921000-150921013 chr6:150921004-150921011 chr6:150921001-150921014 chr6:150921003-150921012
13	ZNF384	chr6:150920545-150920951	GM12878	blood:	n/a	n/a
14	ESRRA	chr6:150920131-150920985	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000232891	TF binding region
PLEKHG1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150911800-150920800	Weak transcription	Aorta	Aorta
2	chr6:150918400-150920800	Weak transcription	Psoas Muscle	Psoas
3	chr6:150919200-150921000	Weak transcription	Spleen	Spleen
4	chr6:150920200-150920800	Flanking Active TSS	Fetal Intestine Small	intestine
5	chr6:150920200-150920800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
6	chr6:150920200-150920800	Enhancers	Lung	lung
7	chr6:150920200-150922400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr6:150920200-150922400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:150920200-150922400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:150920200-150922400	Active TSS	Fetal Kidney	kidney
11	chr6:150920200-150922400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr6:150920200-150922600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:150920400-150920800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150920400-150920800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
15	chr6:150920400-150920800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:150920400-150920800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:150920400-150920800	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr6:150920400-150920800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr6:150920400-150920800	Flanking Active TSS	Fetal Brain Female	brain
20	chr6:150920400-150920800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr6:150920400-150920800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:150920400-150920800	Flanking Active TSS	HMEC	breast
23	chr6:150920400-150920800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
24	chr6:150920400-150921600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
25	chr6:150920400-150921600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:150920400-150921800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr6:150920400-150921800	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr6:150920400-150921800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr6:150920400-150922000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:150920400-150922000	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr6:150920400-150922000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:150920400-150922000	Active TSS	Liver	Liver
33	chr6:150920400-150922000	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr6:150920400-150922200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:150920400-150922200	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr6:150920400-150922200	Active TSS	Duodenum Mucosa	Duodenum
37	chr6:150920400-150922400	Active TSS	Brain Angular Gyrus	brain
38	chr6:150920400-150922400	Active TSS	Rectal Smooth Muscle	rectum
39	chr6:150920400-150922400	Active TSS	Small Intestine	intestine
40	chr6:150920400-150922400	Active TSS	Stomach Mucosa	stomach
41	chr6:150920400-150922600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr6:150920400-150923000	Active TSS	Right Atrium	heart
43	chr6:150920400-150923200	Active TSS	Thymus	Thymus
44	chr6:150920600-150920800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr6:150920600-150920800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr6:150920600-150920800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:150920600-150920800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:150920600-150920800	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr6:150920600-150920800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr6:150920600-150920800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links