Variant report

Variant	rs542960866
Chromosome Location	chr9:72090136-72090137
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72088172..72090177-chr9:72119590..72122551,2	MCF-7	breast:
2	chr9:72089155..72091732-chr9:72106824..72109478,2	MCF-7	breast:
3	chr9:72089279..72091764-chr9:72373318..72374835,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037109	chr9:72040184-72120270	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430067	chr9:72080989-72116806	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1037298	chr9:72085974-72118434	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv614567	chr9:72089820-72118767	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72079000-72091600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72081600-72090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:72082000-72091000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:72082200-72090600	Weak transcription	Fetal Lung	lung
5	chr9:72082200-72091000	Weak transcription	Fetal Stomach	stomach
6	chr9:72082400-72090200	Weak transcription	Spleen	Spleen
7	chr9:72082400-72091200	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72082800-72091000	Weak transcription	Esophagus	oesophagus
9	chr9:72082800-72091400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:72083000-72091000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:72086400-72090800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:72086600-72091400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:72086600-72091800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:72086800-72091400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:72087400-72091000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:72087600-72090200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:72087600-72091400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:72087600-72091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:72087600-72091600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:72087800-72090400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:72087800-72091000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:72087800-72091600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:72087800-72101400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:72088000-72090200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:72088000-72096800	Weak transcription	Liver	Liver
26	chr9:72088200-72091000	Weak transcription	Fetal Brain Female	brain
27	chr9:72089000-72092200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:72089200-72091800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:72089200-72092000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr9:72089400-72090200	Enhancers	Pancreas	Pancrea
31	chr9:72089400-72090400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:72089400-72091200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:72089400-72092000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:72089400-72092000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr9:72089400-72092200	Enhancers	Fetal Thymus	thymus
36	chr9:72089600-72091000	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr9:72089800-72090600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr9:72089800-72091000	Enhancers	Primary hematopoietic stem cells	blood
39	chr9:72089800-72091800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr9:72089800-72092000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:72089800-72092000	Enhancers	Stomach Mucosa	stomach
42	chr9:72090000-72090400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:72090000-72090600	Enhancers	Gastric	stomach
44	chr9:72090000-72091400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:72090000-72091800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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