Variant report

Variant	rs542982120
Chromosome Location	chr8:10261482-10261483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv465460	chr8:10241411-10290566	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv610265	chr8:10241411-10290566	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv610266	chr8:10250758-10294330	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1019701	chr8:10254709-10279269	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3377474	chr8:10261242-10265440	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10249000-10275200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:10255200-10267800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:10256000-10267600	Weak transcription	Brain Angular Gyrus	brain
5	chr8:10256800-10266400	Weak transcription	Fetal Heart	heart
6	chr8:10257000-10267600	Weak transcription	Right Ventricle	heart
7	chr8:10257000-10274400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:10257600-10267000	Weak transcription	Right Atrium	heart
9	chr8:10258200-10263000	Weak transcription	Spleen	Spleen
10	chr8:10258200-10263200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:10258200-10263200	Weak transcription	Liver	Liver
12	chr8:10258200-10267800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:10258200-10274400	Weak transcription	Esophagus	oesophagus
14	chr8:10258400-10263200	Weak transcription	Pancreas	Pancrea
15	chr8:10258400-10265000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:10258600-10262400	Weak transcription	Fetal Intestine Small	intestine
17	chr8:10259600-10263200	Enhancers	Fetal Brain Male	brain
18	chr8:10259600-10263400	Enhancers	HSMMtube	muscle
19	chr8:10259600-10263800	Enhancers	Fetal Muscle Trunk	muscle
20	chr8:10259600-10264200	Enhancers	Fetal Muscle Leg	muscle
21	chr8:10260200-10261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:10261000-10261600	Weak transcription	Psoas Muscle	Psoas
23	chr8:10261000-10262400	Enhancers	Brain Germinal Matrix	brain
24	chr8:10261200-10261600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:10261200-10263600	Enhancers	Fetal Brain Female	brain
26	chr8:10261200-10263600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr8:10261200-10264600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr8:10261200-10273000	Weak transcription	Primary B cells from cord blood	blood
29	chr8:10261400-10261800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:10261400-10268600	Weak transcription	Brain Anterior Caudate	brain

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