Variant report

Variant	rs543003789
Chromosome Location	chr19:52664098-52664099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:52659695..52662598-chr19:52663474..52665682,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
2	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762047	chr19:52647312-52668951	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv817856	chr19:52647893-52668697	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv580007	chr19:52660279-52693277	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1059417	chr19:52662380-52703801	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv2760529	chr19:52662380-52703813	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52651600-52667200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:52653800-52670600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:52654000-52667200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:52654000-52669000	ZNF genes & repeats	Liver	Liver
5	chr19:52654400-52671600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:52654600-52669200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:52655600-52665600	ZNF genes & repeats	Fetal Lung	lung
8	chr19:52656200-52666400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr19:52656400-52664600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr19:52656400-52665800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr19:52656400-52669000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:52656400-52669200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr19:52656600-52667000	ZNF genes & repeats	Fetal Brain Female	brain
14	chr19:52656600-52668200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr19:52656800-52664600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:52656800-52665000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr19:52656800-52665200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:52656800-52666400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr19:52656800-52667200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr19:52656800-52669200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:52657000-52666400	ZNF genes & repeats	Dnd41	blood
22	chr19:52657000-52666600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:52658000-52664600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr19:52659000-52667000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
25	chr19:52659000-52668600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:52659400-52671800	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr19:52659600-52669000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr19:52660000-52669200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr19:52660200-52666600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
30	chr19:52660400-52665200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:52660400-52665200	Weak transcription	Stomach Mucosa	stomach
32	chr19:52660400-52669200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr19:52660600-52669000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr19:52661600-52669000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr19:52661600-52672200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr19:52661800-52664800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
37	chr19:52661800-52665600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr19:52661800-52666600	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr19:52661800-52667200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr19:52661800-52667200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
41	chr19:52661800-52669000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr19:52662000-52664200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
43	chr19:52662000-52664800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr19:52662000-52664800	ZNF genes & repeats	Fetal Kidney	kidney
45	chr19:52662000-52665200	Strong transcription	Colon Smooth Muscle	Colon
46	chr19:52662000-52665200	Strong transcription	Rectal Smooth Muscle	rectum
47	chr19:52662000-52665400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
48	chr19:52662000-52665600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
49	chr19:52662000-52665800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr19:52662000-52666400	ZNF genes & repeats	Aorta	Aorta

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