Variant report

Variant	rs543120642
Chromosome Location	chr5:45192356-45192357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:45189744..45191464-chr5:45191625..45193258,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033740	chr5:44996257-45378556	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537743	chr5:44996257-45378556	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1018651	chr5:45003750-45437670	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv537744	chr5:45003750-45437670	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869151	chr5:45003751-45362364	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830280	chr5:45067773-45250757	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2760956	chr5:45180567-45220336	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1794011	chr5:45182131-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1800407	chr5:45182131-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1800516	chr5:45182131-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv532804	chr5:45184041-45972996	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv597960	chr5:45187918-45193469	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv597961	chr5:45187918-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3469204	chr5:45191491-45193976	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3469205	chr5:45191508-45193984	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3469203	chr5:45191561-45193913	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3469206	chr5:45191561-45193913	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv21194	chr5:45191689-45193819	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1792214	chr5:45191744-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1792471	chr5:45191744-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1794344	chr5:45191744-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1796065	chr5:45191744-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1797960	chr5:45191744-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1799647	chr5:45191744-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1800915	chr5:45191744-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1802884	chr5:45191744-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1800833	chr5:45191744-45229673	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1799409	chr5:45191744-45249604	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv2422014	chr5:45192192-45212691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv597962	chr5:45192209-45193469	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1794704	chr5:45192209-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1796594	chr5:45192209-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1797488	chr5:45192209-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1799716	chr5:45192209-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1802232	chr5:45192209-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv1803026	chr5:45192209-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv1803927	chr5:45192209-45193745	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv597963	chr5:45192209-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv597964	chr5:45192209-45200736	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv597965	chr5:45192314-45193745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv597966	chr5:45192314-45205747	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv597967	chr5:45192314-45210282	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:45182400-45192400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:45184400-45192600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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