Variant report

Variant	rs543122985
Chromosome Location	chr11:17318973-17318974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1799284	chr11:17299390-17343486	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1799280	chr11:17299390-17354775	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1801731	chr11:17299390-17354775	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv897017	chr11:17318236-17343486	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17320000	Weak transcription	Esophagus	oesophagus
2	chr11:17299000-17323200	Weak transcription	Ovary	ovary
3	chr11:17299000-17323400	Weak transcription	Aorta	Aorta
4	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
7	chr11:17299200-17319800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:17299200-17325600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:17299200-17329600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:17299400-17338200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:17299400-17355400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:17299600-17335000	Weak transcription	Primary B cells from cord blood	blood
15	chr11:17299800-17327600	Weak transcription	HUVEC	blood vessel
16	chr11:17300200-17335000	Weak transcription	Fetal Brain Male	brain
17	chr11:17301600-17350400	Weak transcription	Fetal Heart	heart
18	chr11:17302200-17321800	Weak transcription	NHEK	skin
19	chr11:17302600-17329600	Weak transcription	K562	blood
20	chr11:17305800-17332400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:17306200-17353000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:17307600-17328000	Weak transcription	Pancreas	Pancrea
23	chr11:17307800-17333600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:17308200-17323000	Weak transcription	Lung	lung
25	chr11:17308200-17335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:17308200-17353600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:17308200-17357600	Weak transcription	HepG2	liver
28	chr11:17308200-17360800	Strong transcription	Fetal Thymus	thymus
29	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:17308400-17335000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:17308400-17335000	Weak transcription	NHLF	lung
32	chr11:17308400-17356800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:17308400-17361600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:17308800-17331800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:17308800-17331800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:17309000-17324200	Weak transcription	Brain Germinal Matrix	brain
37	chr11:17309000-17327400	Weak transcription	Fetal Brain Female	brain
38	chr11:17309000-17331200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:17309000-17355600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:17309200-17323200	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:17309400-17335200	Weak transcription	Psoas Muscle	Psoas
42	chr11:17309600-17329600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:17310000-17320600	Weak transcription	Liver	Liver
44	chr11:17310800-17323400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:17311600-17321800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:17312200-17355400	Weak transcription	Fetal Kidney	kidney
47	chr11:17313800-17335400	Weak transcription	HSMMtube	muscle
48	chr11:17314200-17353400	Weak transcription	Stomach Mucosa	stomach
49	chr11:17314400-17335000	Strong transcription	Dnd41	blood
50	chr11:17315200-17335000	Weak transcription	Colonic Mucosa	Colon

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