Variant report

Variant	rs543471904
Chromosome Location	chr13:65350130-65350131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL445989.1-22	chr13:65349990-65350330	l_866_chr13:65338173-65350330_testes
2	lnc-AL445989.1-22	chr13:65349990-65350352	NONHSAT034192

Extended variants
information (count: 54 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1038150	chr13:65224379-65354892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1042755	chr13:65300441-65400043	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv561970	chr13:65338673-65352129	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv511524	chr13:65339575-65350465	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv561975	chr13:65339575-65352237	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv561976	chr13:65339575-65353103	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv561977	chr13:65339575-65353382	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv561978	chr13:65339575-65360698	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv561979	chr13:65339575-65366000	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv561989	chr13:65342539-65352129	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv561990	chr13:65342539-65352237	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
15	nsv561991	chr13:65342539-65352759	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv561992	chr13:65342539-65352940	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
17	nsv561993	chr13:65342539-65352958	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
18	nsv561994	chr13:65342539-65353103	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
19	nsv561995	chr13:65342539-65353382	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
20	nsv561996	chr13:65342539-65360698	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
21	nsv561997	chr13:65342539-65360737	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
22	nsv562005	chr13:65342591-65352129	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	nsv562006	chr13:65342591-65352237	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
24	nsv562007	chr13:65342591-65352940	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	nsv562008	chr13:65342591-65352958	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
26	nsv562009	chr13:65342591-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
27	nsv562010	chr13:65342591-65353382	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
28	nsv562011	chr13:65342591-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	nsv562020	chr13:65342642-65352129	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	nsv562021	chr13:65342642-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv562022	chr13:65342642-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	nsv562023	chr13:65342642-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
33	nsv562030	chr13:65342696-65352129	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
34	nsv562031	chr13:65342696-65352940	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
35	nsv562032	chr13:65342696-65352958	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
36	nsv562033	chr13:65342696-65353042	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
37	nsv562034	chr13:65342696-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	nsv562039	chr13:65342752-65352237	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	nsv562040	chr13:65342752-65352958	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
40	nsv562041	chr13:65342752-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
41	nsv562047	chr13:65342863-65352317	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
42	nsv562048	chr13:65342863-65353103	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
43	nsv562049	chr13:65342863-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
44	nsv562050	chr13:65342863-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
45	nsv562054	chr13:65343014-65352368	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
46	nsv562055	chr13:65343014-65353103	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
47	nsv562056	chr13:65343014-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
48	nsv562060	chr13:65343028-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
49	nsv562061	chr13:65343028-65360698	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
50	nsv562062	chr13:65343130-65353382	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links