Variant report

Variant	rs543662786
Chromosome Location	chr9:72514733-72514734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72513695..72515625-chr9:72515816..72518282,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524309	chr9:72514177-72527688	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72512000-72515800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:72512400-72515600	Enhancers	A549	lung
3	chr9:72512400-72515800	Enhancers	Osteobl	bone
4	chr9:72512400-72516000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:72512600-72515200	Enhancers	Brain Cingulate Gyrus	brain
6	chr9:72512600-72515400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:72512600-72515400	Enhancers	Brain Hippocampus Middle	brain
8	chr9:72512600-72515600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:72512600-72515600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:72512600-72515600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:72512600-72515600	Enhancers	Hela-S3	cervix
12	chr9:72512600-72515800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:72512600-72515800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:72512600-72515800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:72512600-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:72512600-72515800	Enhancers	HMEC	breast
17	chr9:72512600-72515800	Enhancers	NHDF-Ad	bronchial
18	chr9:72512600-72515800	Enhancers	NHEK	skin
19	chr9:72512800-72515600	Enhancers	Brain Substantia Nigra	brain
20	chr9:72512800-72515600	Enhancers	HSMMtube	muscle
21	chr9:72512800-72515800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:72512800-72515800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:72512800-72515800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:72512800-72515800	Enhancers	HSMM	muscle
25	chr9:72512800-72515800	Enhancers	NH-A	brain
26	chr9:72512800-72515800	Enhancers	NHLF	lung
27	chr9:72513000-72514800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:72513000-72515200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:72513000-72515600	Enhancers	Brain Angular Gyrus	brain
30	chr9:72513000-72515800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:72513000-72515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:72513200-72515200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:72513400-72515400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:72513800-72515600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:72514000-72515400	Enhancers	Brain Anterior Caudate	brain
36	chr9:72514000-72515400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr9:72514000-72539600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr9:72514600-72514800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:72514600-72514800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:72514600-72515800	Enhancers	HUVEC	blood vessel

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