Variant report

Variant	rs543885911
Chromosome Location	chr4:47916440-47916441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:47916070..47916645-chr6:32939554..32940093,2	Hela-S3	cervix:
2	chr4:47914296..47917191-chr4:48017364..48021197,5	MCF-7	breast:
3	chr4:47915045..47916605-chr4:48017433..48018940,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NIPAL1-1	chr4:47916159-47916721	NONHSAT096273
2	lnc-NIPAL1-1	chr4:47916244-47916721	NONHSAT096275
3	lnc-NIPAL1-1	chr4:47916244-47916721	NONHSAT096274
4	lnc-NIPAL1-1	chr4:47915823-47916721	NONHSAT096272

No data

Variant related genes	Relation type
ENSG00000198515	Chromatin interaction
ENSG00000163293	Chromatin interaction
ENSG00000204256	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594118	chr4:47560386-47917730	Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1013947	chr4:47915527-48052824	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv537082	chr4:47915527-48052824	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47913400-47917200	Active TSS	Muscle Satellite Cultured Cells	--
2	chr4:47914200-47917400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:47914400-47917000	Active TSS	GM12878-XiMat	blood
4	chr4:47914400-47917400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:47914400-47917600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:47914400-47917600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:47915000-47916800	Active TSS	NHLF	lung
8	chr4:47915000-47917200	Active TSS	HMEC	breast
9	chr4:47915000-47917400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr4:47915000-47917400	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr4:47915000-47917400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr4:47915000-47917600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr4:47915200-47917200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:47915200-47917200	Active TSS	H9 Cell Line	embryonic stem cell
15	chr4:47915200-47917200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:47915200-47917200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:47915200-47917200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:47915200-47917200	Active TSS	Aorta	Aorta
19	chr4:47915200-47917200	Active TSS	Pancreas	Pancrea
20	chr4:47915200-47917200	Active TSS	Psoas Muscle	Psoas
21	chr4:47915200-47917400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:47915200-47917400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:47915200-47917400	Active TSS	Brain Germinal Matrix	brain
24	chr4:47915200-47917600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:47915400-47916800	Active TSS	HSMM	muscle
26	chr4:47915400-47917000	Active TSS	Hela-S3	cervix
27	chr4:47915400-47917200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:47915400-47917200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:47915400-47917200	Active TSS	Colonic Mucosa	Colon
30	chr4:47915400-47917200	Active TSS	Fetal Kidney	kidney
31	chr4:47915400-47917200	Active TSS	Gastric	stomach
32	chr4:47915400-47917400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr4:47915400-47917400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:47915400-47917600	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr4:47915600-47916800	Active TSS	Osteobl	bone
36	chr4:47915600-47917000	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr4:47915600-47917000	Active TSS	Colon Smooth Muscle	Colon
38	chr4:47915600-47917000	Active TSS	Placenta Amnion	Placenta Amnion
39	chr4:47915600-47917000	Bivalent/Poised TSS	HepG2	liver
40	chr4:47915600-47917000	Active TSS	K562	blood
41	chr4:47915600-47917200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:47915600-47917200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:47915600-47917200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:47915600-47917200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:47915600-47917200	Active TSS	Placenta	Placenta
46	chr4:47915600-47917200	Active TSS	Left Ventricle	heart
47	chr4:47915600-47917200	Active TSS	Ovary	ovary
48	chr4:47915600-47917200	Active TSS	Stomach Mucosa	stomach
49	chr4:47915600-47917200	Active TSS	NHDF-Ad	bronchial
50	chr4:47915600-47917400	Active TSS	Breast Myoepithelial Primary Cells	Breast

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