Variant report

Variant	rs543981397
Chromosome Location	chr9:15275203-15275204
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15273681..15276030-chr9:15420461..15422928,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15238400-15275400	Weak transcription	Fetal Intestine Large	intestine
2	chr9:15240600-15275400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:15241200-15286200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:15243000-15293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:15249600-15276200	Weak transcription	Fetal Kidney	kidney
6	chr9:15249800-15276200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:15250200-15288200	Weak transcription	Fetal Stomach	stomach
8	chr9:15253800-15286400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:15254000-15293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:15254200-15275400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:15254200-15276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:15254200-15293000	Weak transcription	NHEK	skin
13	chr9:15254200-15295600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:15257000-15277800	Weak transcription	Fetal Lung	lung
15	chr9:15259200-15293400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:15260600-15283000	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:15261800-15279200	Weak transcription	Ovary	ovary
18	chr9:15263000-15276200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:15263800-15283000	Weak transcription	Aorta	Aorta
20	chr9:15264200-15285800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:15268800-15277400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:15272200-15276200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:15272200-15276400	Weak transcription	Left Ventricle	heart
24	chr9:15273000-15275600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:15273000-15276200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:15273600-15286000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr9:15273600-15293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:15273800-15275600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:15273800-15276400	Weak transcription	Esophagus	oesophagus
30	chr9:15273800-15277400	Weak transcription	Lung	lung
31	chr9:15273800-15280200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr9:15273800-15282800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:15274000-15275400	Weak transcription	Fetal Intestine Small	intestine
34	chr9:15274000-15276000	Weak transcription	Stomach Mucosa	stomach
35	chr9:15274000-15276400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:15274000-15277000	Weak transcription	Gastric	stomach
37	chr9:15274000-15277600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr9:15274000-15286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr9:15274000-15288400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:15274000-15288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:15274400-15275400	Weak transcription	HepG2	liver
42	chr9:15274400-15276200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr9:15274400-15279400	Weak transcription	Primary T cells from cord blood	blood
44	chr9:15274600-15277800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:15274600-15281200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr9:15274600-15281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:15274800-15275600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:15274800-15280600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr9:15275000-15277600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:15275000-15280200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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