Variant report

Variant	rs544175017
Chromosome Location	chr6:150528586-150528587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150521985..150525407-chr6:150525748..150528930,3	K562	blood:
2	chr6:150463460..150465300-chr6:150528363..150530339,2	K562	blood:
3	chr6:150527436..150531235-chr6:150531369..150534733,5	K562	blood:
4	chr6:150520781..150525407-chr6:150526478..150529331,4	K562	blood:

Variant related genes	Relation type
ENSG00000198729	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3321568	chr6:150528559-150532857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
3	chr6:150524000-150532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150525200-150528600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150525200-150529000	Weak transcription	HMEC	breast
6	chr6:150525400-150528600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150525400-150533400	Weak transcription	Right Atrium	heart
8	chr6:150526200-150529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:150526400-150528800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:150526400-150529200	Weak transcription	Osteobl	bone
11	chr6:150526600-150529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:150526600-150529000	Weak transcription	Left Ventricle	heart
13	chr6:150526600-150529400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:150526600-150531200	Weak transcription	Spleen	Spleen
15	chr6:150526600-150532400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:150526800-150530600	Weak transcription	K562	blood
18	chr6:150527400-150530200	Weak transcription	Right Ventricle	heart
19	chr6:150528200-150531400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:150528400-150528600	Enhancers	Psoas Muscle	Psoas
21	chr6:150528400-150530400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:150528400-150530600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:150528400-150530800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:150528400-150530800	Enhancers	NHEK	skin

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