Variant report

Variant	rs544479091
Chromosome Location	chr7:104627313-104627314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104626171..104628640-chr7:104635063..104636890,2	MCF-7	breast:
2	chr7:104626935..104628552-chr7:105161341..105163414,2	K562	blood:
3	chr7:104627274..104629727-chr7:104630896..104634327,3	MCF-7	breast:
4	chr7:104622776..104625398-chr7:104626077..104628432,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPK2-1	chr7:104622194-104631612	NONHSAT122589

Variant related genes	Relation type
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv526422	chr7:104618318-104632980	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2829879	chr7:104618318-104652671	Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv437561	chr7:104626690-104647571	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104625000-104629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:104625000-104629400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:104625000-104629400	Weak transcription	Esophagus	oesophagus
4	chr7:104625000-104629400	Weak transcription	Lung	lung
5	chr7:104625000-104629400	Weak transcription	Ovary	ovary
6	chr7:104625000-104629400	Weak transcription	Small Intestine	intestine
7	chr7:104625000-104631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:104625000-104631400	Weak transcription	Spleen	Spleen
9	chr7:104625000-104633600	Weak transcription	Aorta	Aorta
10	chr7:104625000-104641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:104625000-104647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:104625200-104627400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:104625200-104627400	Enhancers	Fetal Kidney	kidney
14	chr7:104625200-104627800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:104625200-104628000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:104625200-104628400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:104625200-104629400	Weak transcription	Fetal Stomach	stomach
18	chr7:104625200-104630600	Enhancers	Osteobl	bone
19	chr7:104625200-104631200	Enhancers	Liver	Liver
20	chr7:104625200-104643800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:104625400-104627400	Enhancers	Brain Substantia Nigra	brain
22	chr7:104625400-104627600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:104625400-104627800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:104625400-104627800	Enhancers	Brain Anterior Caudate	brain
25	chr7:104625400-104628000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:104625400-104628000	Enhancers	Colonic Mucosa	Colon
27	chr7:104625400-104629400	Weak transcription	Right Ventricle	heart
28	chr7:104625400-104629400	Weak transcription	Thymus	Thymus
29	chr7:104625400-104629400	Enhancers	NHLF	lung
30	chr7:104625400-104633200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:104625400-104643000	Weak transcription	Fetal Brain Female	brain
32	chr7:104625600-104627400	Enhancers	HepG2	liver
33	chr7:104625600-104627400	Genic enhancers	HSMM	muscle
34	chr7:104625600-104627400	Genic enhancers	NHEK	skin
35	chr7:104625600-104627800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr7:104625600-104627800	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:104625600-104628200	Enhancers	NHDF-Ad	bronchial
38	chr7:104625600-104628400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:104625600-104628800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:104625600-104629000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr7:104625600-104629400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:104625600-104629400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:104625600-104629400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:104625600-104631400	Weak transcription	Gastric	stomach
45	chr7:104625600-104636400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:104625800-104627400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:104625800-104627600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr7:104625800-104628200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr7:104625800-104628200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:104625800-104628400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links