The 2.0 version of rSNPBase

Variant report

Variant rs544556
Chromosome Location chr1:92609593-92609594
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92552600-92613400 Weak transcription Stomach Smooth Muscle stomach
2 chr1:92552800-92613600 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr1:92555200-92620400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:92556000-92613600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:92556600-92613400 Weak transcription Fetal Brain Female brain
6 chr1:92560000-92613600 Weak transcription Brain Anterior Caudate brain
7 chr1:92561200-92619600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:92567200-92624200 Weak transcription Fetal Stomach stomach
9 chr1:92567400-92618000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:92568200-92616400 Weak transcription Colon Smooth Muscle Colon
11 chr1:92569800-92613600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:92570000-92619600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:92571800-92613400 Weak transcription Dnd41 blood
14 chr1:92572000-92613400 Weak transcription Brain Hippocampus Middle brain
15 chr1:92574000-92613400 Weak transcription Fetal Lung lung
16 chr1:92580800-92615200 Weak transcription Lung lung
17 chr1:92580800-92619000 Weak transcription Pancreas Pancrea
18 chr1:92581400-92613600 Weak transcription Liver Liver
19 chr1:92586000-92613400 Weak transcription Esophagus oesophagus
20 chr1:92590200-92613400 Weak transcription Brain Angular Gyrus brain
21 chr1:92590200-92624400 Weak transcription Psoas Muscle Psoas
22 chr1:92591200-92613000 Weak transcription Primary hematopoietic stem cells blood
23 chr1:92591200-92613600 Weak transcription Aorta Aorta
24 chr1:92591200-92615200 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:92594000-92613400 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr1:92594000-92618200 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:92596200-92614000 Weak transcription Brain Germinal Matrix brain
28 chr1:92596600-92615200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:92596600-92616600 Weak transcription Primary T cells fromperipheralblood blood
30 chr1:92597600-92621000 Weak transcription Fetal Intestine Small intestine
31 chr1:92597800-92616600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:92598000-92613400 Weak transcription Brain Substantia Nigra brain
33 chr1:92598400-92613400 Weak transcription Ovary ovary
34 chr1:92598400-92619400 Weak transcription Brain Cingulate Gyrus brain
35 chr1:92598600-92613800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:92599200-92613200 Weak transcription Primary T cells from cord blood blood
37 chr1:92599200-92613600 Weak transcription Fetal Intestine Large intestine
38 chr1:92601200-92634400 Weak transcription Rectal Smooth Muscle rectum
39 chr1:92602200-92620000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:92602400-92616000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:92602400-92618000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:92602600-92613400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:92603000-92615200 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:92604400-92612800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:92604400-92613400 Weak transcription Left Ventricle heart
46 chr1:92606200-92615400 Weak transcription HSMMtube muscle
47 chr1:92606800-92620000 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr1:92608800-92613400 Weak transcription Adipose Nuclei Adipose
49 chr1:92609000-92614000 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015