Variant report

Variant	rs544793485
Chromosome Location	chr14:65709369-65709370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65687275..65689393-chr14:65708965..65710587,2	MCF-7	breast:
2	chr14:65703266..65707350-chr14:65709369..65712516,3	K562	blood:
3	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
4	chr14:65703752..65707201-chr14:65707603..65710596,4	MCF-7	breast:
5	chr14:65630625..65634047-chr14:65708648..65711135,3	MCF-7	breast:
6	chr14:65708443..65711390-chr14:65727270..65732025,4	MCF-7	breast:
7	chr14:65707878..65709895-chr14:65801423..65803291,2	MCF-7	breast:
8	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:
9	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
10	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAX-2	chr14:65708499-65709934	XLOC_011054

No data

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction
ENSG00000266740	Chromatin interaction
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564934	chr14:65706758-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3530160	chr14:65709103-65713060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3530161	chr14:65709131-65713034	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3530162	chr14:65709136-65713012	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3530163	chr14:65709233-65712969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv18660	chr14:65709258-65712968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65697400-65710600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:65703400-65711800	Enhancers	Fetal Intestine Small	intestine
4	chr14:65704800-65710400	Weak transcription	Small Intestine	intestine
5	chr14:65705000-65710400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:65705000-65710600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:65706000-65710600	Weak transcription	NHEK	skin
8	chr14:65706400-65709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65706400-65710000	Weak transcription	Gastric	stomach
10	chr14:65706400-65710000	Weak transcription	K562	blood
11	chr14:65706600-65710400	Weak transcription	Pancreas	Pancrea
12	chr14:65706600-65710400	Weak transcription	HMEC	breast
13	chr14:65706600-65710400	Weak transcription	HSMM	muscle
14	chr14:65706600-65710600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
16	chr14:65706800-65709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:65706800-65709800	Weak transcription	NHLF	lung
18	chr14:65706800-65710400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:65706800-65710600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:65706800-65710600	Weak transcription	Osteobl	bone
21	chr14:65706800-65711000	Weak transcription	Hela-S3	cervix
22	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65707000-65709600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr14:65707000-65709800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:65707000-65709800	Weak transcription	Placenta	Placenta
26	chr14:65707000-65709800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:65707000-65710200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:65707000-65710400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:65707000-65710400	Weak transcription	NHDF-Ad	bronchial
30	chr14:65707000-65710600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:65707000-65710600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:65707000-65710800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
34	chr14:65708000-65709400	Enhancers	HepG2	liver
35	chr14:65708400-65710400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:65708400-65710400	Weak transcription	Fetal Thymus	thymus
37	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain
39	chr14:65708600-65710000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr14:65708800-65710600	Enhancers	HUVEC	blood vessel
41	chr14:65709000-65710600	Weak transcription	GM12878-XiMat	blood
42	chr14:65709000-65713200	Enhancers	Fetal Intestine Large	intestine
43	chr14:65709200-65709400	Enhancers	NH-A	brain
44	chr14:65709200-65710000	Enhancers	Stomach Mucosa	stomach
45	chr14:65709200-65710600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr14:65709200-65711400	Flanking Active TSS	A549	lung

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