Variant report

Variant	rs545065151
Chromosome Location	chr20:24598164-24598165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3338106	chr20:24598052-24599550	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
3	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24592000-24599400	Weak transcription	Brain Hippocampus Middle	brain
5	chr20:24594200-24599600	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24594400-24608400	Weak transcription	Spleen	Spleen
7	chr20:24594600-24599200	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24594600-24599400	Weak transcription	Fetal Heart	heart
9	chr20:24594600-24599800	Weak transcription	Left Ventricle	heart
10	chr20:24594600-24600400	Weak transcription	Thymus	Thymus
11	chr20:24594600-24601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:24594800-24599800	Weak transcription	Right Atrium	heart
13	chr20:24596800-24598400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:24597200-24598200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr20:24597600-24598200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr20:24597800-24600400	Weak transcription	Fetal Thymus	thymus
17	chr20:24598000-24598200	Enhancers	Brain Cingulate Gyrus	brain
18	chr20:24598000-24601200	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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