Variant report

Variant	rs545138369
Chromosome Location	chr3:24870597-24870598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24870259..24872185-chr3:24874165..24877170,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834643	chr3:24779627-24942886	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv876629	chr3:24813960-24875084	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv3734	chr3:24861568-24906866	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24870200-24870600	Bivalent Enhancer	Liver	Liver
2	chr3:24870200-24870600	Flanking Active TSS	Brain Hippocampus Middle	brain
3	chr3:24870200-24870600	Flanking Active TSS	Colon Smooth Muscle	Colon
4	chr3:24870200-24870600	Bivalent Enhancer	Fetal Brain Male	brain
5	chr3:24870200-24870800	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr3:24870200-24872200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:24870200-24872600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr3:24870200-24872600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr3:24870200-24872600	Active TSS	Brain Angular Gyrus	brain
10	chr3:24870200-24872800	Active TSS	Brain Anterior Caudate	brain
11	chr3:24870400-24870600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:24870400-24870600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:24870400-24870600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:24870400-24870600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr3:24870400-24870600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
18	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
19	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr3:24870400-24870600	Flanking Active TSS	Fetal Lung	lung
21	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
23	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
24	chr3:24870400-24870600	Enhancers	Gastric	stomach
25	chr3:24870400-24870600	Enhancers	Left Ventricle	heart
26	chr3:24870400-24870600	Enhancers	Pancreas	Pancrea
27	chr3:24870400-24870600	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr3:24870400-24870600	Enhancers	Right Ventricle	heart
29	chr3:24870400-24870600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
30	chr3:24870400-24870600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
31	chr3:24870400-24870600	Bivalent Enhancer	NH-A	brain
32	chr3:24870400-24870800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:24870400-24870800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr3:24870400-24870800	Bivalent Enhancer	Fetal Intestine Large	intestine
35	chr3:24870400-24870800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr3:24870400-24871000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:24870400-24871000	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr3:24870400-24871200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr3:24870400-24871200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:24870400-24871200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:24870400-24871200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:24870400-24871200	Bivalent/Poised TSS	Colonic Mucosa	Colon
43	chr3:24870400-24871200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
44	chr3:24870400-24871200	Enhancers	Lung	lung
45	chr3:24870400-24871200	Active TSS	Psoas Muscle	Psoas
46	chr3:24870400-24871200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
47	chr3:24870400-24871200	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr3:24870400-24871400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:24870400-24871400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:24870400-24871600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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