The 2.0 version of rSNPBase

Variant report

Variant rs545307767
Chromosome Location chr5:58486440-58486441
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58449800-58489400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:58474400-58520000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:58474800-58491000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr5:58479800-58487200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr5:58479800-58489800 Weak transcription Gastric stomach
6 chr5:58480200-58488800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr5:58481000-58486600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr5:58484400-58489200 Weak transcription Hela-S3 cervix
9 chr5:58484400-58489400 Weak transcription HSMMtube muscle
10 chr5:58484400-58489800 Active TSS Right Ventricle heart
11 chr5:58484600-58486800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr5:58484600-58495600 Weak transcription Fetal Kidney kidney
13 chr5:58484800-58486600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr5:58484800-58486600 Enhancers Colon Smooth Muscle Colon
15 chr5:58484800-58489400 Weak transcription NH-A brain
16 chr5:58484800-58489800 Weak transcription Fetal Heart heart
17 chr5:58484800-58491000 Weak transcription Fetal Stomach stomach
18 chr5:58484800-58501200 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr5:58485000-58486600 Enhancers Rectal Smooth Muscle rectum
20 chr5:58485000-58489000 Weak transcription Primary B cells from peripheral blood blood
21 chr5:58485000-58489200 Weak transcription Muscle Satellite Cultured Cells --
22 chr5:58485000-58489200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr5:58485000-58489800 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr5:58485000-58491200 Weak transcription Duodenum Mucosa Duodenum
25 chr5:58485000-58491800 Weak transcription Stomach Smooth Muscle stomach
26 chr5:58485000-58492600 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr5:58485000-58499000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr5:58485000-58505200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr5:58485000-58518800 Weak transcription Primary hematopoietic stem cells blood
30 chr5:58485400-58489400 Weak transcription Osteobl bone
31 chr5:58485600-58488200 Weak transcription Left Ventricle heart
32 chr5:58485600-58491000 Weak transcription Aorta Aorta
33 chr5:58485600-58500400 Weak transcription Psoas Muscle Psoas
34 chr5:58485600-58501600 Weak transcription HUVEC blood vessel
35 chr5:58485600-58512400 Weak transcription Pancreas Pancrea
36 chr5:58485600-58518200 Weak transcription Fetal Muscle Trunk muscle
37 chr5:58485800-58489600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr5:58485800-58489600 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr5:58486000-58488600 Weak transcription Placenta Amnion Placenta Amnion
40 chr5:58486000-58489400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr5:58486000-58489400 Weak transcription Fetal Intestine Small intestine
42 chr5:58486000-58489400 Weak transcription Fetal Muscle Leg muscle
43 chr5:58486000-58489600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr5:58486000-58494200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr5:58486000-58508600 Weak transcription Fetal Intestine Large intestine
46 chr5:58486400-58486800 Flanking Active TSS A549 lung

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Last update: Aug 31, 2015